Potential of entomopathogenic fungal isolates for Control of the soil-dwelling life stages of Thaumatotibia leucotreta Meyrick (Lepidoptera: Tortricidae) in citrus
- Coombes, Candice A, Hill, Martin P, Dames, Joanna F, Moore, Sean D
- Authors: Coombes, Candice A , Hill, Martin P , Dames, Joanna F , Moore, Sean D
- Date: 2017
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59885 , vital:27684 , https://doi.org/10.4001/003.025.0235
- Description: Thaumatotibia leucotreta Meyrick (Lepidoptera: Tortricidae) is a key pest of citrus in South Africa. In addition to the fruit damage caused, export markets such as the United States, South Korea and China regulate T. leucotreta as a phytosanitary organism in addition to restricting the use of pesticides on exported fruit (Grout & Moore 2015; SA-DAFF 2015). The bulk of citrus in South Africa is exported (Citrus Growers' Association 2015). Thus, the control of T. leucotreta is crucial. Consequently, the citrus industry adopts a zero tolerance approach controlling the pest, being strongly reliant on integrated pest management (Moore & Hattingh 2012). Numerous control options are available, but are largely limited to use against the above-ground life stages of this pest: eggs, neonates and adults (Moore & Hattingh 2012; Grout & Moore 2015).
- Full Text:
- Date Issued: 2017
- Authors: Coombes, Candice A , Hill, Martin P , Dames, Joanna F , Moore, Sean D
- Date: 2017
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59885 , vital:27684 , https://doi.org/10.4001/003.025.0235
- Description: Thaumatotibia leucotreta Meyrick (Lepidoptera: Tortricidae) is a key pest of citrus in South Africa. In addition to the fruit damage caused, export markets such as the United States, South Korea and China regulate T. leucotreta as a phytosanitary organism in addition to restricting the use of pesticides on exported fruit (Grout & Moore 2015; SA-DAFF 2015). The bulk of citrus in South Africa is exported (Citrus Growers' Association 2015). Thus, the control of T. leucotreta is crucial. Consequently, the citrus industry adopts a zero tolerance approach controlling the pest, being strongly reliant on integrated pest management (Moore & Hattingh 2012). Numerous control options are available, but are largely limited to use against the above-ground life stages of this pest: eggs, neonates and adults (Moore & Hattingh 2012; Grout & Moore 2015).
- Full Text:
- Date Issued: 2017
Assimilation of organic and inorganic nutrients by Erica root fungi from the fynbos ecosystem
- Bizabani, Christine, Dames, Joanna F
- Authors: Bizabani, Christine , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444079 , vital:74183 , https://doi.org/10.1016/j.funbio.2015.11.006
- Description: Erica dominate the fynbos ecosystem, which is characterized by acidic soils that are rich in organic matter. The ericaceae associate with ericoid mycorrhizal (ERM) fungi for survival. In this study fungal biomass accumulation in vitro was used to determine nutrient utilisation of various inorganic and organic substrates. This is an initial step towards establishment of the ecological roles of typical ERM fungi and other root fungi associated with Erica plants, with regard to host nutrition. Meliniomyces sp., Acremonium implicatum, Leohumicola sp., Cryptosporiopsis erica, Oidiodendron maius and an unidentified Helotiales fungus were selected from fungi previously isolated and identified from Erica roots. Sole nitrogen sources ammonium, nitrate, arginine and Bovine Serum Albumin (BSA) were tested. Meliniomyces and Leohumicola species were able to utilise BSA effectively. Phosphorus nutrition was tested using orthophosphate, sodium inositol hexaphosphate and DNA. Most isolates preferred orthophosphate. Meliniomyces sp. and A. implicatum were able to accumulate significant biomass using DNA. Carbon utilisation was tested using glucose, cellobiose, carboxymethylcellulose, pectin and tannic acid substrates. All fungal isolates produced high biomass on glucose and cellobiose. The ability to utilize organic nutrient sources in culture, illustrates their potential role of these fungi in host nutrition in the fynbos ecosystem.
- Full Text:
- Date Issued: 2016
- Authors: Bizabani, Christine , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444079 , vital:74183 , https://doi.org/10.1016/j.funbio.2015.11.006
- Description: Erica dominate the fynbos ecosystem, which is characterized by acidic soils that are rich in organic matter. The ericaceae associate with ericoid mycorrhizal (ERM) fungi for survival. In this study fungal biomass accumulation in vitro was used to determine nutrient utilisation of various inorganic and organic substrates. This is an initial step towards establishment of the ecological roles of typical ERM fungi and other root fungi associated with Erica plants, with regard to host nutrition. Meliniomyces sp., Acremonium implicatum, Leohumicola sp., Cryptosporiopsis erica, Oidiodendron maius and an unidentified Helotiales fungus were selected from fungi previously isolated and identified from Erica roots. Sole nitrogen sources ammonium, nitrate, arginine and Bovine Serum Albumin (BSA) were tested. Meliniomyces and Leohumicola species were able to utilise BSA effectively. Phosphorus nutrition was tested using orthophosphate, sodium inositol hexaphosphate and DNA. Most isolates preferred orthophosphate. Meliniomyces sp. and A. implicatum were able to accumulate significant biomass using DNA. Carbon utilisation was tested using glucose, cellobiose, carboxymethylcellulose, pectin and tannic acid substrates. All fungal isolates produced high biomass on glucose and cellobiose. The ability to utilize organic nutrient sources in culture, illustrates their potential role of these fungi in host nutrition in the fynbos ecosystem.
- Full Text:
- Date Issued: 2016
Detection of plant growth enhancing features in psychrotolerant yeasts from Patagonia (Argentina)
- Mestre, María C, Fontenla, Sonia, Bruzone, Marie C, Fernández, Natalia V, Dames, Joanna F
- Authors: Mestre, María C , Fontenla, Sonia , Bruzone, Marie C , Fernández, Natalia V , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448581 , vital:74744 , https://doi.org/10.1002/jobm.201500728
- Description: This study explores the biotechnological potential for plant production of twelve psychrotolerant yeasts strains from Northwest‐Patagonia. These strains were isolated from different substrates associated with Nothofagus sp. in native forests and Vaccinium sp. in a commercial plantation. Yeasts characterization was performed using in vitro assays to evaluate the production of auxin‐like compounds and siderophores, ability to solubilize inorganic phosphate and to reduce common plant pathogen growth. Strain YF8.3 identified as Aureobasidium pullullans was the main producer of auxin‐like and siderophores compounds. Phosphate solubilization was a characteristic observed by strains L8.12 and CRUB1775 identified as Holtermaniella takashimae and Candida maritima, respectively. Different yeast strains were able to inhibit the growth of Verticillium dahliae PPRI5569 and Pythium aphanidermatum PPRI 9009, but they all failed to inhibit the growth of Fusarium oxysporum PPRI5457. The present study, suggests that yeasts present in different environments in Northwestern‐Patagonian have physiological in vitro features which may influence plant growth. These results are promising for the developing of biological products based on Patagonian yeasts for plant production in cold‐temperate regions.
- Full Text:
- Date Issued: 2016
- Authors: Mestre, María C , Fontenla, Sonia , Bruzone, Marie C , Fernández, Natalia V , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448581 , vital:74744 , https://doi.org/10.1002/jobm.201500728
- Description: This study explores the biotechnological potential for plant production of twelve psychrotolerant yeasts strains from Northwest‐Patagonia. These strains were isolated from different substrates associated with Nothofagus sp. in native forests and Vaccinium sp. in a commercial plantation. Yeasts characterization was performed using in vitro assays to evaluate the production of auxin‐like compounds and siderophores, ability to solubilize inorganic phosphate and to reduce common plant pathogen growth. Strain YF8.3 identified as Aureobasidium pullullans was the main producer of auxin‐like and siderophores compounds. Phosphate solubilization was a characteristic observed by strains L8.12 and CRUB1775 identified as Holtermaniella takashimae and Candida maritima, respectively. Different yeast strains were able to inhibit the growth of Verticillium dahliae PPRI5569 and Pythium aphanidermatum PPRI 9009, but they all failed to inhibit the growth of Fusarium oxysporum PPRI5457. The present study, suggests that yeasts present in different environments in Northwestern‐Patagonian have physiological in vitro features which may influence plant growth. These results are promising for the developing of biological products based on Patagonian yeasts for plant production in cold‐temperate regions.
- Full Text:
- Date Issued: 2016
Entomopathogenic fungi as control agents of Thaumatotibia leucotreta in citrus orchards: field efficacy and persistence
- Coombes, Candice A, Hill, Martin P, Moore, Sean D, Dames, Joanna F
- Authors: Coombes, Candice A , Hill, Martin P , Moore, Sean D , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/417956 , vital:71497 , xlink:href="https://doi.org/10.1007/s10526-016-9756-x"
- Description: Entomopathogenic fungal isolates Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae) strain G Ar 17 B3 and Metarhizium anisopliae (Metchnikoff) Sorokin (Hypocreales: Clavicipitaceae) strain FCM Ar 23 B3 have been identified as effective control agents of the important citrus pest Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae) wandering fifth instars under laboratory conditions. This study is the first report on the ability of these isolates to persist and reduce T. leucotreta infestation in commercial citrus orchards in South Africa. A reduction in pest infestation of between 28 and 82 % upon trial completion was reported. Both isolates were recovered from soil samples collected five months post-application with high host density and moderate to high soil moisture favouring recovery. Low soil moisture negatively influenced the persistence of both isolates and the control efficiency of B. bassiana. These results provide evidence and support for the future use of these isolates against T. leucotreta thus warranting further investigation.
- Full Text:
- Date Issued: 2016
- Authors: Coombes, Candice A , Hill, Martin P , Moore, Sean D , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/417956 , vital:71497 , xlink:href="https://doi.org/10.1007/s10526-016-9756-x"
- Description: Entomopathogenic fungal isolates Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae) strain G Ar 17 B3 and Metarhizium anisopliae (Metchnikoff) Sorokin (Hypocreales: Clavicipitaceae) strain FCM Ar 23 B3 have been identified as effective control agents of the important citrus pest Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae) wandering fifth instars under laboratory conditions. This study is the first report on the ability of these isolates to persist and reduce T. leucotreta infestation in commercial citrus orchards in South Africa. A reduction in pest infestation of between 28 and 82 % upon trial completion was reported. Both isolates were recovered from soil samples collected five months post-application with high host density and moderate to high soil moisture favouring recovery. Low soil moisture negatively influenced the persistence of both isolates and the control efficiency of B. bassiana. These results provide evidence and support for the future use of these isolates against T. leucotreta thus warranting further investigation.
- Full Text:
- Date Issued: 2016
Ericoid fungal inoculation of blueberry under commercial production in South Africa
- Bizabani, Christine, Fontenla, Sonia, Dames, Joanna F
- Authors: Bizabani, Christine , Fontenla, Sonia , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448610 , vital:74746 , https://doi.org/10.1016/j.scienta.2016.06.029
- Description: Ericoid mycorrhizal (ERM) fungi are known to enhance growth of plants belonging to the Ericaceae family. However, the outcomes of root-fungal associations in this family are influenced by several factors such as soil nutrient status, climatic conditions, host variety and fungal partner. The aim of this study was (i) to determine whether symbiotic fungal structures form in roots of Misty (Vaccinium corymbosum) and Brightwell (V. ashei) blueberry varieties, following inoculation with Leohumicola, Oidiodendron maius and Meliniomyces fungal species, and (ii) evaluate inoculation effects on the growth of blueberry varieties. The study was conducted for 60 weeks under commercial production conditions at Amathole Berries, Sutterheim, South Africa. All three fungi were isolated from Erica plants growing naturally in Albany Centre of Endemism of South Africa. All ERM formed mycorrhizal structures characteristic of typical ericoid colonisation in the roots of both Misty and Brightwell. However, percentage colonisation was low. The highest colonisation percentage, 20.4%, was observed in Misty inoculated with Oidiodendron maius. Colonisation was significantly different compared to un-inoculated controls in the Misty variety. In both varieties inoculated with either Leohumicola or Meliniomyces did not improve (p > 0.05) shoot growth and biomass. All fungal species improved root biomass in Misty but not in Brightwell. This indicates that ERM inoculation may potentially benefit plant of Misty and that responses to ERM inoculation vary between blueberry varieties.
- Full Text:
- Date Issued: 2016
- Authors: Bizabani, Christine , Fontenla, Sonia , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448610 , vital:74746 , https://doi.org/10.1016/j.scienta.2016.06.029
- Description: Ericoid mycorrhizal (ERM) fungi are known to enhance growth of plants belonging to the Ericaceae family. However, the outcomes of root-fungal associations in this family are influenced by several factors such as soil nutrient status, climatic conditions, host variety and fungal partner. The aim of this study was (i) to determine whether symbiotic fungal structures form in roots of Misty (Vaccinium corymbosum) and Brightwell (V. ashei) blueberry varieties, following inoculation with Leohumicola, Oidiodendron maius and Meliniomyces fungal species, and (ii) evaluate inoculation effects on the growth of blueberry varieties. The study was conducted for 60 weeks under commercial production conditions at Amathole Berries, Sutterheim, South Africa. All three fungi were isolated from Erica plants growing naturally in Albany Centre of Endemism of South Africa. All ERM formed mycorrhizal structures characteristic of typical ericoid colonisation in the roots of both Misty and Brightwell. However, percentage colonisation was low. The highest colonisation percentage, 20.4%, was observed in Misty inoculated with Oidiodendron maius. Colonisation was significantly different compared to un-inoculated controls in the Misty variety. In both varieties inoculated with either Leohumicola or Meliniomyces did not improve (p > 0.05) shoot growth and biomass. All fungal species improved root biomass in Misty but not in Brightwell. This indicates that ERM inoculation may potentially benefit plant of Misty and that responses to ERM inoculation vary between blueberry varieties.
- Full Text:
- Date Issued: 2016
Screening of entomopathogenic fungi against citrus mealybug, Plannococcus citri (Hemiptera: Pseudococcidae)
- Chartier FitzGerald, Veronique C, Hill, Martin P, Moore, Sean D, Dames, Joanna F
- Authors: Chartier FitzGerald, Veronique C , Hill, Martin P , Moore, Sean D , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/407059 , vital:70333 , xlink:href="https://hdl.handle.net/10520/EJC195093"
- Description: Planococcus citri (citrus mealybug) is a common and damaging citrus crop pest which has proven difficult to control using conventional methods, such as chemical pesticides and insect growth regulators, particularly late in the citrus growing season. The virulence of two entomopathogenic fungal species was studied in laboratory bioassays against the crawlers and adults of P. citri. Isolates of Metarhizium anisopliae and Beauveria bassiana, collected from citrus orchards in the Eastern Cape Province in South Africa, were verified using and molecular techniques. Mealybug bioassays were performed in 24-well plates. Beauveria bassiana (GAR 17 B3) and M. anisopliae (FCM AR 23 B3) isolates both resulted in 67.5 % mortality of mealybug crawlers and B. bassiana (GB AR 23 13 3) resulted in 64 % crawler mortality with concentrations of 1 x 107 conidia/ml. These three isolates were further tested in multipledose bioassays to determine the median lethal concentration (LC50), which were 5.29 x 105conidia/ml for the M. anisopliae isolate (FCM AR 23 B3), 4.25 x 106 conidia/ml for B. bassiana (GAR 17 B3), and 6.65 x 107 conidia/ml B. bassiana (GB AR 23 13 3) for crawlers, respectively. The results of this study suggested that two isolates (M. anisopliae FCM AR 23 B3 and B. bassiana GAR 17 B3) showed potential for further development as biological control agents against citrus mealybug. Further research would be required to determine their ability to perform under field conditions.
- Full Text:
- Date Issued: 2016
- Authors: Chartier FitzGerald, Veronique C , Hill, Martin P , Moore, Sean D , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/407059 , vital:70333 , xlink:href="https://hdl.handle.net/10520/EJC195093"
- Description: Planococcus citri (citrus mealybug) is a common and damaging citrus crop pest which has proven difficult to control using conventional methods, such as chemical pesticides and insect growth regulators, particularly late in the citrus growing season. The virulence of two entomopathogenic fungal species was studied in laboratory bioassays against the crawlers and adults of P. citri. Isolates of Metarhizium anisopliae and Beauveria bassiana, collected from citrus orchards in the Eastern Cape Province in South Africa, were verified using and molecular techniques. Mealybug bioassays were performed in 24-well plates. Beauveria bassiana (GAR 17 B3) and M. anisopliae (FCM AR 23 B3) isolates both resulted in 67.5 % mortality of mealybug crawlers and B. bassiana (GB AR 23 13 3) resulted in 64 % crawler mortality with concentrations of 1 x 107 conidia/ml. These three isolates were further tested in multipledose bioassays to determine the median lethal concentration (LC50), which were 5.29 x 105conidia/ml for the M. anisopliae isolate (FCM AR 23 B3), 4.25 x 106 conidia/ml for B. bassiana (GAR 17 B3), and 6.65 x 107 conidia/ml B. bassiana (GB AR 23 13 3) for crawlers, respectively. The results of this study suggested that two isolates (M. anisopliae FCM AR 23 B3 and B. bassiana GAR 17 B3) showed potential for further development as biological control agents against citrus mealybug. Further research would be required to determine their ability to perform under field conditions.
- Full Text:
- Date Issued: 2016
Soil biota in a megadiverse country current knowledge and future research directions in South Africa
- Janion-Scheepers, Charlene, Measey, John, Braschler, Brigitte, Chown, Steven L, Coetzee, Louisee, Colville, Jonathan F, Dames, Joanna F, Davies, Andrew B, Davies, Sarah J, Davis, Adrian L V, Dippenaar-Schoeman, Ansi S, Duffy, Grant A, Fouries, Driekie, Griffiths, Charles, Haddad, Charles R, Hamer, Michelle, Herbert, David G, Hugo-Coetzee, Elizabeth A, Jacobs, Adriaanas, Jacobs, Karin, Jansen van Rensburg, Candice, Lamani, Siviwe, Lotz, Leon N, vdm Louw, Schalk, Lyle, Robin, Malan, Antoinette P, Marais, Mariette, Neethling, Jan-Andries, Nxele, Thembeka, Plisko, Danuta J, Prendini, Lorenzo, Rink, Ariella N, Swart, Antionette, Theron, Pieter, Truter, Mariette, Ueckermnn, Eddie, Uys, Vivienne M, Villet, Martin H, Willows-Munro, Sandy, Wilson, R U
- Authors: Janion-Scheepers, Charlene , Measey, John , Braschler, Brigitte , Chown, Steven L , Coetzee, Louisee , Colville, Jonathan F , Dames, Joanna F , Davies, Andrew B , Davies, Sarah J , Davis, Adrian L V , Dippenaar-Schoeman, Ansi S , Duffy, Grant A , Fouries, Driekie , Griffiths, Charles , Haddad, Charles R , Hamer, Michelle , Herbert, David G , Hugo-Coetzee, Elizabeth A , Jacobs, Adriaanas , Jacobs, Karin , Jansen van Rensburg, Candice , Lamani, Siviwe , Lotz, Leon N , vdm Louw, Schalk , Lyle, Robin , Malan, Antoinette P , Marais, Mariette , Neethling, Jan-Andries , Nxele, Thembeka , Plisko, Danuta J , Prendini, Lorenzo , Rink, Ariella N , Swart, Antionette , Theron, Pieter , Truter, Mariette , Ueckermnn, Eddie , Uys, Vivienne M , Villet, Martin H , Willows-Munro, Sandy , Wilson, R U
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448682 , vital:74751 , https://doi.org/10.1016/j.pedobi.2016.03.004
- Description: Soils are integral to agricultural productivity, biodiversity, and the maintenance of ecosystem services. However, soil ecosystem research depends on foundational biological knowledge that is often missing. In this review, we present a comprehensive, cross-taxa overview of the soil biota of South Africa. We discuss the literature and sampling methods used to assess soil biota, the available taxonomic expertise and main collections within South Africa, the availability of identification guides and online resources, and the status and distribution of described species. We include species lists for all South African soil biota and, for groups with sufficient distribution records, species richness maps. Despite South Africa being only 0.8% of the earth’s terrestrial area, it contains nearly 1.8% of the world’s described soil species (mean per taxon 3.64%, range 0.17–15%; n = 36 groups), with nematodes and earthworms showing a remarkable (6.4 and 7.7%) proportion of globally described diversity. Endemism is high for most groups, ranging from 33–92%. However, major knowledge gaps exist for most soil biota groups. While sampling has been relatively comprehensive in some areas for a few groups (particularly those with direct socioeconomic impacts), the Nama-Karoo, Northern Cape and Eastern Cape are poorly sampled. Natural soils in biodiversity hotspots, such as the Fynbos Biome, are also understudied. We argue that a more integrative approach to acquiring foundational knowledge in soil biodiversity is needed if applied soil research is to be effective in ensuring sustainable soil health. Considerable investment will be required to bring our understanding of the soil biodiversity in this megadiverse region to a level where the Millennium Development Goals can be reached.
- Full Text:
- Date Issued: 2016
Soil biota in a megadiverse country current knowledge and future research directions in South Africa
- Authors: Janion-Scheepers, Charlene , Measey, John , Braschler, Brigitte , Chown, Steven L , Coetzee, Louisee , Colville, Jonathan F , Dames, Joanna F , Davies, Andrew B , Davies, Sarah J , Davis, Adrian L V , Dippenaar-Schoeman, Ansi S , Duffy, Grant A , Fouries, Driekie , Griffiths, Charles , Haddad, Charles R , Hamer, Michelle , Herbert, David G , Hugo-Coetzee, Elizabeth A , Jacobs, Adriaanas , Jacobs, Karin , Jansen van Rensburg, Candice , Lamani, Siviwe , Lotz, Leon N , vdm Louw, Schalk , Lyle, Robin , Malan, Antoinette P , Marais, Mariette , Neethling, Jan-Andries , Nxele, Thembeka , Plisko, Danuta J , Prendini, Lorenzo , Rink, Ariella N , Swart, Antionette , Theron, Pieter , Truter, Mariette , Ueckermnn, Eddie , Uys, Vivienne M , Villet, Martin H , Willows-Munro, Sandy , Wilson, R U
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448682 , vital:74751 , https://doi.org/10.1016/j.pedobi.2016.03.004
- Description: Soils are integral to agricultural productivity, biodiversity, and the maintenance of ecosystem services. However, soil ecosystem research depends on foundational biological knowledge that is often missing. In this review, we present a comprehensive, cross-taxa overview of the soil biota of South Africa. We discuss the literature and sampling methods used to assess soil biota, the available taxonomic expertise and main collections within South Africa, the availability of identification guides and online resources, and the status and distribution of described species. We include species lists for all South African soil biota and, for groups with sufficient distribution records, species richness maps. Despite South Africa being only 0.8% of the earth’s terrestrial area, it contains nearly 1.8% of the world’s described soil species (mean per taxon 3.64%, range 0.17–15%; n = 36 groups), with nematodes and earthworms showing a remarkable (6.4 and 7.7%) proportion of globally described diversity. Endemism is high for most groups, ranging from 33–92%. However, major knowledge gaps exist for most soil biota groups. While sampling has been relatively comprehensive in some areas for a few groups (particularly those with direct socioeconomic impacts), the Nama-Karoo, Northern Cape and Eastern Cape are poorly sampled. Natural soils in biodiversity hotspots, such as the Fynbos Biome, are also understudied. We argue that a more integrative approach to acquiring foundational knowledge in soil biodiversity is needed if applied soil research is to be effective in ensuring sustainable soil health. Considerable investment will be required to bring our understanding of the soil biodiversity in this megadiverse region to a level where the Millennium Development Goals can be reached.
- Full Text:
- Date Issued: 2016
The role of entomopathogenic fungi in the control of citrus pests in South Africa: cause for optimism
- Coombes, Candice A, Chartier-Fizgerald, Veronique C, Wiblin, Danielle, Dames, Joanna F, Hill, Martin P, Moore, Sean D
- Authors: Coombes, Candice A , Chartier-Fizgerald, Veronique C , Wiblin, Danielle , Dames, Joanna F , Hill, Martin P , Moore, Sean D
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/453480 , vital:75257 , ISBN 978-1-83768-091-7 , https://iobc-wprs.org/product/the-role-of-entomopathogenic-fungi-in-the-control-of-citrus-pests-in-south-africa-cause-for-optimism/
- Description: Citrus is a highly productive crop in South Africa, but it is damaged by a number of pests that result in yield loss and have the potential to limit market access. Maximum residue limits (MRLs) imposed by importing countries have driven the need for alternative control technologies, including the use of entomopathogenic fungi (EPF). Bioprospecting in citrus orchards and seven years of bioassay trials identified Beauveria bassiana G Ar 17 B3 and Metarhizium anisopliae G 11 3 L6 and FCM Ar 23 B3 as the most virulent fungal isolates. Preliminary trials with these three fungi against the arboreal pests, California red scale, Aonidiella aurantii (Maskell), citrus mealybug, Planococcus citri (Risso) and citrus thrips, Scirtothrips aurantii Faure, have been promising. False codling moth (FCM), Thaumatotibia leucotreta (Meyrick) is the most important citrus pest in South Africa and while considerable research has been conducted on controlling the insect on the tree, the soil borne stages of this insect have largely been ignored. After laboratory bioassays, the three fungal isolates were taken to field trials. All three isolates persisted for at least six months after application to the soil. A large scale field trial, showed that although all three isolates reduced FCM infestation, isolate B. bassiana G Ar 17 B3 performed best, recording a consistent 80% reduction in FCM infestation throughout the trial period. The results of nearly 10 years of research on the potential of EPFs in the control of citrus pests in South Africa are certainly cause for optimism.
- Full Text:
- Date Issued: 2016
- Authors: Coombes, Candice A , Chartier-Fizgerald, Veronique C , Wiblin, Danielle , Dames, Joanna F , Hill, Martin P , Moore, Sean D
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/453480 , vital:75257 , ISBN 978-1-83768-091-7 , https://iobc-wprs.org/product/the-role-of-entomopathogenic-fungi-in-the-control-of-citrus-pests-in-south-africa-cause-for-optimism/
- Description: Citrus is a highly productive crop in South Africa, but it is damaged by a number of pests that result in yield loss and have the potential to limit market access. Maximum residue limits (MRLs) imposed by importing countries have driven the need for alternative control technologies, including the use of entomopathogenic fungi (EPF). Bioprospecting in citrus orchards and seven years of bioassay trials identified Beauveria bassiana G Ar 17 B3 and Metarhizium anisopliae G 11 3 L6 and FCM Ar 23 B3 as the most virulent fungal isolates. Preliminary trials with these three fungi against the arboreal pests, California red scale, Aonidiella aurantii (Maskell), citrus mealybug, Planococcus citri (Risso) and citrus thrips, Scirtothrips aurantii Faure, have been promising. False codling moth (FCM), Thaumatotibia leucotreta (Meyrick) is the most important citrus pest in South Africa and while considerable research has been conducted on controlling the insect on the tree, the soil borne stages of this insect have largely been ignored. After laboratory bioassays, the three fungal isolates were taken to field trials. All three isolates persisted for at least six months after application to the soil. A large scale field trial, showed that although all three isolates reduced FCM infestation, isolate B. bassiana G Ar 17 B3 performed best, recording a consistent 80% reduction in FCM infestation throughout the trial period. The results of nearly 10 years of research on the potential of EPFs in the control of citrus pests in South Africa are certainly cause for optimism.
- Full Text:
- Date Issued: 2016
Beauveria and Metarhizium against false codling moth (Lepidoptera: Tortricidae): a step towards selecting isolates for potential development of a mycoinsecticide
- Coombes, Candice A, Hill, Martin P, Moore, Sean D, Dames, Joanna F, Fullard, T
- Authors: Coombes, Candice A , Hill, Martin P , Moore, Sean D , Dames, Joanna F , Fullard, T
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/405757 , vital:70203 , xlink:href="https://hdl.handle.net/10520/EJC167505"
- Description: False codling moth, Thaumatotibia leucotreta Meyrick (1912) (Lepidoptera: Tortricidae), can cause both pre- and post-harvest damage to citrus fruit. Not only can this result in reduced crop yield, but more importantly because of the moth's endemism to sub-Saharan Africa, it is classified as a phytosanitary pest by many export markets. An entire consignment of citrus may be rejected in the presence of a single moth (Moore 2012). Since the bulk of citrus fruit production in South Africa is exported, the control of T. leucotreta is critical (Citrus Growers Association, South Africa 2012). Traditionally, control has been achieved through the use of chemical insecticides; however, residue restrictions, resistance development and concerns about environmental pollution have substantially reduced the dependence on chemical pesticides in citrus. Research on T. leucotreta control has therefore focused on the use of biological organisms (e.g. parasitoids and viruses), which are used as control agents within an integrated pest management (IPM) programme in citrus. These biological control agents, however, only targeted the aboveground life stages of the pest, not the soil-dwelling life stages (late fifth instars, prepupae, pupae), which is the subject of this contribution (Moore 2012).
- Full Text:
- Date Issued: 2015
- Authors: Coombes, Candice A , Hill, Martin P , Moore, Sean D , Dames, Joanna F , Fullard, T
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/405757 , vital:70203 , xlink:href="https://hdl.handle.net/10520/EJC167505"
- Description: False codling moth, Thaumatotibia leucotreta Meyrick (1912) (Lepidoptera: Tortricidae), can cause both pre- and post-harvest damage to citrus fruit. Not only can this result in reduced crop yield, but more importantly because of the moth's endemism to sub-Saharan Africa, it is classified as a phytosanitary pest by many export markets. An entire consignment of citrus may be rejected in the presence of a single moth (Moore 2012). Since the bulk of citrus fruit production in South Africa is exported, the control of T. leucotreta is critical (Citrus Growers Association, South Africa 2012). Traditionally, control has been achieved through the use of chemical insecticides; however, residue restrictions, resistance development and concerns about environmental pollution have substantially reduced the dependence on chemical pesticides in citrus. Research on T. leucotreta control has therefore focused on the use of biological organisms (e.g. parasitoids and viruses), which are used as control agents within an integrated pest management (IPM) programme in citrus. These biological control agents, however, only targeted the aboveground life stages of the pest, not the soil-dwelling life stages (late fifth instars, prepupae, pupae), which is the subject of this contribution (Moore 2012).
- Full Text:
- Date Issued: 2015
Current developments in arbuscular mycorrhizal fungi research and its role in salinity stress alleviation a biotechnological perspective
- Kumar, Ashwani, Dames, Joanna F, Gupta, Aditi, Sharma, Satyawati, Gilbert, Jack A, Ahmad, Parvaiz
- Authors: Kumar, Ashwani , Dames, Joanna F , Gupta, Aditi , Sharma, Satyawati , Gilbert, Jack A , Ahmad, Parvaiz
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/443998 , vital:74177 , https://doi.org/10.3109/07388551.2014.899964
- Description: Arbuscular mycorrhizal fungi (AMF) form widespread symbiotic associations with 80% of known land plants. They play a major role in plant nutrition, growth, water absorption, nutrient cycling and protection from pathogens, and as a result, contribute to ecosystem processes. Salinity stress conditions undoubtedly limit plant productivity and, therefore, the role of AMF as a biological tool for improving plant salt stress tolerance, is gaining economic importance worldwide. However, this approach requires a better understanding of how plants and AMF intimately interact with each other in saline environments and how this interaction leads to physiological changes in plants. This knowledge is important to develop sustainable strategies for successful utilization of AMF to improve plant health under a variety of stress conditions. Recent advances in the field of molecular biology, “omics” technology and advanced microscopy can provide new insight about these mechanisms of interaction between AMF and plants, as well as other microbes. This review mainly discusses the effect of salinity on AMF and plants, and role of AMF in alleviation of salinity stress including insight on methods for AMF identification. The focus remains on latest advancements in mycorrhizal research that can potentially offer an integrative understanding of the role of AMF in salinity tolerance and sustainable crop production.
- Full Text:
- Date Issued: 2015
- Authors: Kumar, Ashwani , Dames, Joanna F , Gupta, Aditi , Sharma, Satyawati , Gilbert, Jack A , Ahmad, Parvaiz
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/443998 , vital:74177 , https://doi.org/10.3109/07388551.2014.899964
- Description: Arbuscular mycorrhizal fungi (AMF) form widespread symbiotic associations with 80% of known land plants. They play a major role in plant nutrition, growth, water absorption, nutrient cycling and protection from pathogens, and as a result, contribute to ecosystem processes. Salinity stress conditions undoubtedly limit plant productivity and, therefore, the role of AMF as a biological tool for improving plant salt stress tolerance, is gaining economic importance worldwide. However, this approach requires a better understanding of how plants and AMF intimately interact with each other in saline environments and how this interaction leads to physiological changes in plants. This knowledge is important to develop sustainable strategies for successful utilization of AMF to improve plant health under a variety of stress conditions. Recent advances in the field of molecular biology, “omics” technology and advanced microscopy can provide new insight about these mechanisms of interaction between AMF and plants, as well as other microbes. This review mainly discusses the effect of salinity on AMF and plants, and role of AMF in alleviation of salinity stress including insight on methods for AMF identification. The focus remains on latest advancements in mycorrhizal research that can potentially offer an integrative understanding of the role of AMF in salinity tolerance and sustainable crop production.
- Full Text:
- Date Issued: 2015
Effect of conventional and organic orchard floor management practices on arbuscular mycorrhizal fungi in a ‘Cripp’s Pink’/M7 apple orchard soil
- Meyer, André H, Wooldridge, John, Dames, Joanna F
- Authors: Meyer, André H , Wooldridge, John , Dames, Joanna F
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444012 , vital:74178 , https://doi.org/10.1016/j.agee.2015.07.026
- Description: Arbuscular mycorrhizal (AM) fungi are key components of agricultural soil–plant systems, which may be affected by agricultural practices. In organically managed (ORG) orchards, nutrients are supplied in the form of compost, and weeds are suppressed with mulches, whereas synthetic fertilizers and herbicides are used for these respective purposes in conventional (CON) orchards. The effects of ORG and CON orchard floor management practices on native AM fungi in apple orchards were investigated in a randomized field trial. AM root colonization, spore abundance, infectivity potentials and soil glomalin contents were determined in the 0–30 cm soil depth interval, in tree rows, over consecutive seasons. Root colonization was higher in the ORG than the CON treatments, but intermediate where straw mulch was substituted for green work-row covers. Glomalin levels were not affected by the treatments. Root colonization by AM fungi increased with increasing soil pH, P, C, K, Zn, and Mn concentrations, but were suppressed by Cu. Colonization correlated positively with leaf P, Ca and Mg, and with stem circumference, but negatively with leaf N and yield. ORG orchard floor management practices therefore, promoted functional AM associations more effectively than CON practices.
- Full Text:
- Date Issued: 2015
- Authors: Meyer, André H , Wooldridge, John , Dames, Joanna F
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444012 , vital:74178 , https://doi.org/10.1016/j.agee.2015.07.026
- Description: Arbuscular mycorrhizal (AM) fungi are key components of agricultural soil–plant systems, which may be affected by agricultural practices. In organically managed (ORG) orchards, nutrients are supplied in the form of compost, and weeds are suppressed with mulches, whereas synthetic fertilizers and herbicides are used for these respective purposes in conventional (CON) orchards. The effects of ORG and CON orchard floor management practices on native AM fungi in apple orchards were investigated in a randomized field trial. AM root colonization, spore abundance, infectivity potentials and soil glomalin contents were determined in the 0–30 cm soil depth interval, in tree rows, over consecutive seasons. Root colonization was higher in the ORG than the CON treatments, but intermediate where straw mulch was substituted for green work-row covers. Glomalin levels were not affected by the treatments. Root colonization by AM fungi increased with increasing soil pH, P, C, K, Zn, and Mn concentrations, but were suppressed by Cu. Colonization correlated positively with leaf P, Ca and Mg, and with stem circumference, but negatively with leaf N and yield. ORG orchard floor management practices therefore, promoted functional AM associations more effectively than CON practices.
- Full Text:
- Date Issued: 2015
Effects of inoculating Lachnum and Cadophora isolates on the growth of Vaccinium corymbosum
- Mbizabani, Christine, Dames, Joanna F
- Authors: Mbizabani, Christine , Dames, Joanna F
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444024 , vital:74179 , https://doi.org/10.1016/j.micres.2015.08.005
- Description: The roots of ericaceous plants harbour a diversity of fungal taxa, which confer eco-physiological benefits to the host. Some of the fungi have been established to form ericoid mycorrhizal (ERM) associations and enhance plant growth in certain ericaceous genera. Although, Lachnum and Cadophora isolates have frequently been identified from the roots of this family, the status of their association and functional roles is still vague. The aims of this study were to identify Lachnum and Cadophora isolates; determine the root-fungal interactive structures formed in associations with Vaccinium corymbosum L. (blueberry) hosts and to examine inoculation effects of the fungal associates using several varieties of the blueberry. Lachnum and Cadophora were isolated and identified from Erica cerinthoides L. and Erica demmissa Klotzsch ex Benth using morphological and molecular techniques. Micropropagated blueberry varieties (Bluecrop, Elliott, Spartan, Chandler and Brightwell) were inoculated with respective fungi and plant growth evaluated. Both fungi colonised the roots and did not have any pathogenic effect.
- Full Text:
- Date Issued: 2015
- Authors: Mbizabani, Christine , Dames, Joanna F
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444024 , vital:74179 , https://doi.org/10.1016/j.micres.2015.08.005
- Description: The roots of ericaceous plants harbour a diversity of fungal taxa, which confer eco-physiological benefits to the host. Some of the fungi have been established to form ericoid mycorrhizal (ERM) associations and enhance plant growth in certain ericaceous genera. Although, Lachnum and Cadophora isolates have frequently been identified from the roots of this family, the status of their association and functional roles is still vague. The aims of this study were to identify Lachnum and Cadophora isolates; determine the root-fungal interactive structures formed in associations with Vaccinium corymbosum L. (blueberry) hosts and to examine inoculation effects of the fungal associates using several varieties of the blueberry. Lachnum and Cadophora were isolated and identified from Erica cerinthoides L. and Erica demmissa Klotzsch ex Benth using morphological and molecular techniques. Micropropagated blueberry varieties (Bluecrop, Elliott, Spartan, Chandler and Brightwell) were inoculated with respective fungi and plant growth evaluated. Both fungi colonised the roots and did not have any pathogenic effect.
- Full Text:
- Date Issued: 2015
Variation in urease and β-glucosidase activities with soil depth and root density in a ‘Cripp's Pink’/M7 apple orchard under conventional and organic management.
- Meyer, André H, Wooldridge, John, Dames, Joanna F
- Authors: Meyer, André H , Wooldridge, John , Dames, Joanna F
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444051 , vital:74181 , https://doi.org/10.1080/02571862.2015.1053155
- Description: The effects of conventional (CON; utilising synthetic fertiliser and herbicide) and organic (ORG; nutrients supplied in compost, weeds controlled with straw mulch) orchard floor management practices on depth-wise variation in urease and β-glucosidase activities in tree-row soils were compared in a Western Cape ‘Cripp's Pink’/M7 apple orchard. Urease and β-glucosidase activities were determined spectrophotometrically in soils from five depth intervals from the walls of trenches excavated across the tree rows after seven years of treatment application. Soil pH, organic carbon, nitrate (NO3 ) and ammonium (NH4 ) nitrogen were also determined, as was root density. Enzyme activities were higher in the ORG than the CON topsoils but did not differ significantly (p = 0.05) at depths >30 cm. The positive effects of the ORG treatments were attributed to the liming effect and carbon and nitrogen contributions of the compost. Urease and β-glucosidase activities correlated strongly. Activities of both enzymes correlated significantly and positively with carbon, NO3− and pH, with urease correlated more strongly than β-glucosidase. Only urease correlated with root density. Organic orchard floor management practices may be more effective than CON practices in promoting microbial enzyme activities in the 0–30 cm soil depth intervals of Western Cape apple orchard soils.
- Full Text:
- Date Issued: 2015
- Authors: Meyer, André H , Wooldridge, John , Dames, Joanna F
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444051 , vital:74181 , https://doi.org/10.1080/02571862.2015.1053155
- Description: The effects of conventional (CON; utilising synthetic fertiliser and herbicide) and organic (ORG; nutrients supplied in compost, weeds controlled with straw mulch) orchard floor management practices on depth-wise variation in urease and β-glucosidase activities in tree-row soils were compared in a Western Cape ‘Cripp's Pink’/M7 apple orchard. Urease and β-glucosidase activities were determined spectrophotometrically in soils from five depth intervals from the walls of trenches excavated across the tree rows after seven years of treatment application. Soil pH, organic carbon, nitrate (NO3 ) and ammonium (NH4 ) nitrogen were also determined, as was root density. Enzyme activities were higher in the ORG than the CON topsoils but did not differ significantly (p = 0.05) at depths >30 cm. The positive effects of the ORG treatments were attributed to the liming effect and carbon and nitrogen contributions of the compost. Urease and β-glucosidase activities correlated strongly. Activities of both enzymes correlated significantly and positively with carbon, NO3− and pH, with urease correlated more strongly than β-glucosidase. Only urease correlated with root density. Organic orchard floor management practices may be more effective than CON practices in promoting microbial enzyme activities in the 0–30 cm soil depth intervals of Western Cape apple orchard soils.
- Full Text:
- Date Issued: 2015
Kalaharituber pfeilii and associated bacterial interactions
- Adeleke, Rasheed, Dames, Joanna F
- Authors: Adeleke, Rasheed , Dames, Joanna F
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/440490 , vital:73787 , https://doi.org/10.1016/j.sajb.2013.10.003
- Description: Truffles are generally known to form a mycorrhizal relationship with plants. Kalaharituber pfeilii (Hennings) Trappe and Kagan-Zur is a species of desert truffle that is found in the southern part of Africa. The life cycle of this truffle has not been fully investigated as there are many unconfirmed plant species that have been suggested as potential hosts. Many mycorrhizal associations often involve other role players such as associated bacteria that may influence the establishment of the mycorrhizal formation and function. As part of an effort to understand the life cycle of K. pfeilii, laboratory experiments were conducted to investigate the role of ascocarp associated bacteria. Bacterial isolates obtained from the truffle ascocarps were subjected to microbiological and biochemical tests to determine their potentials as mycorrhizal helper bacteria. Tests conducted included stimulation of mycelial growth in vitro, indole acetic acid (IAA) production and phosphate solubilising. A total of 17 bacterial strains belonging to the Proteobacteria, Firmicutes and Actinobacteria were isolated from the truffle ascocarps and identified with sequence homology and phylogenetic methods. Three of these isolates showed potential to be helper bacteria in at least one of the media tested through the stimulation of mycelial growth. Furthermore, four isolates produced IAA and one was able to solubilise CaHPO3 in vitro. One isolate, identified as a relative of Paenibacillus sp. stimulated mycelial growth on all the media tested. Other bacterial isolates that showed potential stimulation of mycelial growth were identified molecularly as a Bacillus sp. and two strains of Rhizobium sp. This study has contributed to the existing knowledge on the biotic interactions with K. pfeilii which may be useful in further symbiont and re-synthesis investigations.
- Full Text:
- Date Issued: 2014
- Authors: Adeleke, Rasheed , Dames, Joanna F
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/440490 , vital:73787 , https://doi.org/10.1016/j.sajb.2013.10.003
- Description: Truffles are generally known to form a mycorrhizal relationship with plants. Kalaharituber pfeilii (Hennings) Trappe and Kagan-Zur is a species of desert truffle that is found in the southern part of Africa. The life cycle of this truffle has not been fully investigated as there are many unconfirmed plant species that have been suggested as potential hosts. Many mycorrhizal associations often involve other role players such as associated bacteria that may influence the establishment of the mycorrhizal formation and function. As part of an effort to understand the life cycle of K. pfeilii, laboratory experiments were conducted to investigate the role of ascocarp associated bacteria. Bacterial isolates obtained from the truffle ascocarps were subjected to microbiological and biochemical tests to determine their potentials as mycorrhizal helper bacteria. Tests conducted included stimulation of mycelial growth in vitro, indole acetic acid (IAA) production and phosphate solubilising. A total of 17 bacterial strains belonging to the Proteobacteria, Firmicutes and Actinobacteria were isolated from the truffle ascocarps and identified with sequence homology and phylogenetic methods. Three of these isolates showed potential to be helper bacteria in at least one of the media tested through the stimulation of mycelial growth. Furthermore, four isolates produced IAA and one was able to solubilise CaHPO3 in vitro. One isolate, identified as a relative of Paenibacillus sp. stimulated mycelial growth on all the media tested. Other bacterial isolates that showed potential stimulation of mycelial growth were identified molecularly as a Bacillus sp. and two strains of Rhizobium sp. This study has contributed to the existing knowledge on the biotic interactions with K. pfeilii which may be useful in further symbiont and re-synthesis investigations.
- Full Text:
- Date Issued: 2014
Relationship between soil alteration index three (AI3), soil organic matter and tree performance in a 'Cripps Pink/'M7 apple orchard
- Meyer, André H, Wooldridge, John, Dames, Joanna F
- Authors: Meyer, André H , Wooldridge, John , Dames, Joanna F
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444038 , vital:74180 , https://hdl.handle.net/10520/EJC157392
- Description: Alteration index three (AI3), which calculates the balances between three microbially-secreted enzymes, potentially enables differences between soils due to contrasting management practices to be quantified in relative terms. The ability of AI3 to distinguish between apple orchard soils under conventional and organic production protocols, and to reflect tree performance, were tested in a maturing 'Cripps Pink'/M7 apple orchard. Activities of β-glucosidase, phosphatase and urease were determined colourimetrically in extracts of tree-row top-soils (0-15 cm) taken during September and January over five consecutive seasons. Soil organic matter content was determined by dichromate oxidation. Stem circumference and yield were measured manually. AI3 correlated significantly (p = 0.05) with soil organic matter, yield and yield efficiency. AI3 may thus be a useful indicator of relative apple tree performance under organic and conventional soil surface management practices.
- Full Text:
- Date Issued: 2014
- Authors: Meyer, André H , Wooldridge, John , Dames, Joanna F
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444038 , vital:74180 , https://hdl.handle.net/10520/EJC157392
- Description: Alteration index three (AI3), which calculates the balances between three microbially-secreted enzymes, potentially enables differences between soils due to contrasting management practices to be quantified in relative terms. The ability of AI3 to distinguish between apple orchard soils under conventional and organic production protocols, and to reflect tree performance, were tested in a maturing 'Cripps Pink'/M7 apple orchard. Activities of β-glucosidase, phosphatase and urease were determined colourimetrically in extracts of tree-row top-soils (0-15 cm) taken during September and January over five consecutive seasons. Soil organic matter content was determined by dichromate oxidation. Stem circumference and yield were measured manually. AI3 correlated significantly (p = 0.05) with soil organic matter, yield and yield efficiency. AI3 may thus be a useful indicator of relative apple tree performance under organic and conventional soil surface management practices.
- Full Text:
- Date Issued: 2014
Genetic approaches to improve salinity tolerance in plants
- Kumar, Ashwani, Gupta, Aditi, Azooz, M M, Sharma, S, Ahmad, Parvaiz, Dames, Joanna F
- Authors: Kumar, Ashwani , Gupta, Aditi , Azooz, M M , Sharma, S , Ahmad, Parvaiz , Dames, Joanna F
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/453449 , vital:75255 , ISBN , https://doi.org/10.1007/978-1-4614-6108-1_4
- Description: Abiotic stress tolerance in plants is gaining importance day by day. Different techniques are being employed to develop salt tolerant plants that directly or indirectly combat global food problems. Advanced comprehension of stress signal perception and transduction of associated molecular networks is now possible with the development in functional genomics and high throughput sequencing. In plant stress tolerance various genes, proteins, transcription factors, DNA histone-modifying enzymes, and several metabolites are playing very important role in stress tolerance. Determination of genomes of Arabidopsis, Oryza sativa spp. japonica cv. Nipponbare and integration of omics approach has augmented our knowledge pertaining to salt tolerance mechanisms of plants in natural environments. Application of transcriptomics, metabolomics, bioinformatics, and high-through-put DNA sequencing has enabled active analyses of regulatory networks that control abiotic stress responses. To unravel and exploit the function of genes is a major challenge of the post genomic era. This chapter therefore reviews the effect of salt stress on plants and the mechanism of salinity tolerance along with contributory roles of QTL, microRNA, microarray and proteomics.
- Full Text:
- Date Issued: 2013
- Authors: Kumar, Ashwani , Gupta, Aditi , Azooz, M M , Sharma, S , Ahmad, Parvaiz , Dames, Joanna F
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/453449 , vital:75255 , ISBN , https://doi.org/10.1007/978-1-4614-6108-1_4
- Description: Abiotic stress tolerance in plants is gaining importance day by day. Different techniques are being employed to develop salt tolerant plants that directly or indirectly combat global food problems. Advanced comprehension of stress signal perception and transduction of associated molecular networks is now possible with the development in functional genomics and high throughput sequencing. In plant stress tolerance various genes, proteins, transcription factors, DNA histone-modifying enzymes, and several metabolites are playing very important role in stress tolerance. Determination of genomes of Arabidopsis, Oryza sativa spp. japonica cv. Nipponbare and integration of omics approach has augmented our knowledge pertaining to salt tolerance mechanisms of plants in natural environments. Application of transcriptomics, metabolomics, bioinformatics, and high-through-put DNA sequencing has enabled active analyses of regulatory networks that control abiotic stress responses. To unravel and exploit the function of genes is a major challenge of the post genomic era. This chapter therefore reviews the effect of salt stress on plants and the mechanism of salinity tolerance along with contributory roles of QTL, microRNA, microarray and proteomics.
- Full Text:
- Date Issued: 2013
Persistence and virulence of promising entomopathogenic fungal isolates for use in citrus orchards in South Africa
- Coombes, Candice A, Hill, Martin P, Moore, Sean D, Dames, Joanna F, Fullard, T
- Authors: Coombes, Candice A , Hill, Martin P , Moore, Sean D , Dames, Joanna F , Fullard, T
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/416893 , vital:71394 , xlink:href="https://doi.org/10.1080/09583157.2013.819489"
- Description: Thaumatotibia leucotreta (Meyrick) (1912) (Lepidoptera: Tortricidae) is a key economic pest of citrus in South Africa. Although a variety of control options are available, none currently registered target the soil-dwelling life stages of the pest. Three fungal isolates, two Metarhizium anisopliae sensu lato Metschnikoff (Sorokin) isolates (G 11 3 L6 and FCM Ar 23 B3) and one Beauveria bassiana sensu lato Balsamo (Vuillemin) isolate (G Ar 17 B3) have been identified as showing the greatest potential against T. leucotreta soil-dwelling life stages. Since environmental persistence is an important factor in the success of entomopathogenic fungi against soil pests, the isolates, along with two commercial isolates (B. bassiana Eco-Bb® and M. anisopliae ICIPE 69), were subjected to a six-month field persistence trial. Every month after burial of the fungal isolates, inside net bags, in orchard soil, the number of colony forming units (CFUs) per gram of soil was measured and the viability of the conidia was assessed using bioassays. All isolates investigated were capable of persisting in the soil for the duration of the trial period and in addition, were capable of initiating infection in T. leucotreta late fifth instar larvae and subsequent pupae. However, with the exception of the commercial isolates which showed some correlation, no correlation was found between the number of CFUs recorded and percentage T. leucotreta mycosis. Persistence of entomopathogenic fungi in the field is affected by a series of factors, and although the effect of these factors was not measured, the data have provided preliminary evidence towards the persistence capability of these candidate biopesticides against T. leucotreta.
- Full Text:
- Date Issued: 2013
- Authors: Coombes, Candice A , Hill, Martin P , Moore, Sean D , Dames, Joanna F , Fullard, T
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/416893 , vital:71394 , xlink:href="https://doi.org/10.1080/09583157.2013.819489"
- Description: Thaumatotibia leucotreta (Meyrick) (1912) (Lepidoptera: Tortricidae) is a key economic pest of citrus in South Africa. Although a variety of control options are available, none currently registered target the soil-dwelling life stages of the pest. Three fungal isolates, two Metarhizium anisopliae sensu lato Metschnikoff (Sorokin) isolates (G 11 3 L6 and FCM Ar 23 B3) and one Beauveria bassiana sensu lato Balsamo (Vuillemin) isolate (G Ar 17 B3) have been identified as showing the greatest potential against T. leucotreta soil-dwelling life stages. Since environmental persistence is an important factor in the success of entomopathogenic fungi against soil pests, the isolates, along with two commercial isolates (B. bassiana Eco-Bb® and M. anisopliae ICIPE 69), were subjected to a six-month field persistence trial. Every month after burial of the fungal isolates, inside net bags, in orchard soil, the number of colony forming units (CFUs) per gram of soil was measured and the viability of the conidia was assessed using bioassays. All isolates investigated were capable of persisting in the soil for the duration of the trial period and in addition, were capable of initiating infection in T. leucotreta late fifth instar larvae and subsequent pupae. However, with the exception of the commercial isolates which showed some correlation, no correlation was found between the number of CFUs recorded and percentage T. leucotreta mycosis. Persistence of entomopathogenic fungi in the field is affected by a series of factors, and although the effect of these factors was not measured, the data have provided preliminary evidence towards the persistence capability of these candidate biopesticides against T. leucotreta.
- Full Text:
- Date Issued: 2013
Subterranean control of an arboreal pest: EPNs and EPFs for FCM
- Moore, Sean D, Coombes, Candice A, Manrakhan, Aruna, Kirkman, Wayne, Hill, Martin P, Ehlers, Ralf-Udo, Daneel, John-Henry, De Waal, Jeanne, Dames, Joanna F, Malan, Antoinette P
- Authors: Moore, Sean D , Coombes, Candice A , Manrakhan, Aruna , Kirkman, Wayne , Hill, Martin P , Ehlers, Ralf-Udo , Daneel, John-Henry , De Waal, Jeanne , Dames, Joanna F , Malan, Antoinette P
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425450 , vital:72241 , xlink:href="https://www.cabdirect.org/cabdirect/abstract/20133257699"
- Description: Control measures against the false codling moth (FCM), Thaumatotibia leucotreta, have traditionally ignored the soil-borne pupal stage. Recent trials with entomopathogenic nematodes (EPNs) and entomopathogenic fungi (EPFs) have targeted this life-stage. Application of Heterorhabditis bacteriophora to a citrus orchard floor, reduced T. leucotreta infestation of fruit by up to 81%. Conservation of H. zealandica through non-usage of a nematicide also resulted in dramatically lower fruit infestation. Dose-response and exposure time-response bioassays identified the three most promising fungal isolates against pupating T. leucotreta. Orchard trials showed persistence of these fungi in orchard soil for at least six months.
- Full Text:
- Date Issued: 2013
- Authors: Moore, Sean D , Coombes, Candice A , Manrakhan, Aruna , Kirkman, Wayne , Hill, Martin P , Ehlers, Ralf-Udo , Daneel, John-Henry , De Waal, Jeanne , Dames, Joanna F , Malan, Antoinette P
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425450 , vital:72241 , xlink:href="https://www.cabdirect.org/cabdirect/abstract/20133257699"
- Description: Control measures against the false codling moth (FCM), Thaumatotibia leucotreta, have traditionally ignored the soil-borne pupal stage. Recent trials with entomopathogenic nematodes (EPNs) and entomopathogenic fungi (EPFs) have targeted this life-stage. Application of Heterorhabditis bacteriophora to a citrus orchard floor, reduced T. leucotreta infestation of fruit by up to 81%. Conservation of H. zealandica through non-usage of a nematicide also resulted in dramatically lower fruit infestation. Dose-response and exposure time-response bioassays identified the three most promising fungal isolates against pupating T. leucotreta. Orchard trials showed persistence of these fungi in orchard soil for at least six months.
- Full Text:
- Date Issued: 2013
Syntheses, protonation constants and antimicrobial activity of 2-substituted N-alkylimidazole derivatives
- Kleyi, Phumelele, Walmsley, Ryan S, Gundhla, Isaac Z, Walmsley, Tara A, Jauka, Tembisa I, Dames, Joanna F, Walker, Roderick B, Torto, Nelson, Tshentu, Zenixole R
- Authors: Kleyi, Phumelele , Walmsley, Ryan S , Gundhla, Isaac Z , Walmsley, Tara A , Jauka, Tembisa I , Dames, Joanna F , Walker, Roderick B , Torto, Nelson , Tshentu, Zenixole R
- Date: 2012
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/184066 , vital:44165 , xlink:href="https://www.ajol.info/index.php/sajc/article/view/123858"
- Description: A series of N-alkylimidazole-2-carboxylic acid, N-alkylimidazole-2-carboxaldehyde and N-alkylimidazole-2-methanol derivatives [alkyl = benzyl, methyl, ethyl, propyl, butyl, heptyl, octyl and decyl] have been synthesized and the protonation constants determined. The antimicrobial properties of the compounds were tested against Gram-negative (Escherichi coli), Gram-positive (Staphylococcus aureus and Bacillus subtilis subsp. spizizenii) bacterial strains and yeast (C. albicans). Both the disk diffusion and broth microdilution methods for testing the antimicrobial activity showed that N-alkylation of imidazole with longer alkyl chains and the substitution with low pKa group at 2-position resulted in enhanced antimicrobial activity. Particularly, the N-alkylimidazole-2-carboxylic acids exhibited the best antimicrobial activity due to the low pKa of the carboxylic acid moiety. Generally, all the N-alkylimidazole derivatives were most active against the Gram-positive bacteria [S. aureus (MIC = 5–160 µg mL–1) and B. subtilis subsp. spizizenii (5–20 µg mL–1)], with the latter more susceptible. All the compounds showed poor antimicrobial activity against both Gram-negative (E. coli, MIC = 0.15 to >2500 µg mL–1) bacteria and all the compounds were inactive against the yeast (Candida albicans).
- Full Text:
- Date Issued: 2012
- Authors: Kleyi, Phumelele , Walmsley, Ryan S , Gundhla, Isaac Z , Walmsley, Tara A , Jauka, Tembisa I , Dames, Joanna F , Walker, Roderick B , Torto, Nelson , Tshentu, Zenixole R
- Date: 2012
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/184066 , vital:44165 , xlink:href="https://www.ajol.info/index.php/sajc/article/view/123858"
- Description: A series of N-alkylimidazole-2-carboxylic acid, N-alkylimidazole-2-carboxaldehyde and N-alkylimidazole-2-methanol derivatives [alkyl = benzyl, methyl, ethyl, propyl, butyl, heptyl, octyl and decyl] have been synthesized and the protonation constants determined. The antimicrobial properties of the compounds were tested against Gram-negative (Escherichi coli), Gram-positive (Staphylococcus aureus and Bacillus subtilis subsp. spizizenii) bacterial strains and yeast (C. albicans). Both the disk diffusion and broth microdilution methods for testing the antimicrobial activity showed that N-alkylation of imidazole with longer alkyl chains and the substitution with low pKa group at 2-position resulted in enhanced antimicrobial activity. Particularly, the N-alkylimidazole-2-carboxylic acids exhibited the best antimicrobial activity due to the low pKa of the carboxylic acid moiety. Generally, all the N-alkylimidazole derivatives were most active against the Gram-positive bacteria [S. aureus (MIC = 5–160 µg mL–1) and B. subtilis subsp. spizizenii (5–20 µg mL–1)], with the latter more susceptible. All the compounds showed poor antimicrobial activity against both Gram-negative (E. coli, MIC = 0.15 to >2500 µg mL–1) bacteria and all the compounds were inactive against the yeast (Candida albicans).
- Full Text:
- Date Issued: 2012
Ectomycorrhizas in association with Pinus patula in Sabie, South Africa
- Hawley, Greer L, Taylor, A F S, Dames, Joanna F
- Authors: Hawley, Greer L , Taylor, A F S , Dames, Joanna F
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6475 , http://hdl.handle.net/10962/d1006163 , http://www.scielo.org.za/scielo.php?pid=S0038-23532008000400011&script=sci_arttext
- Description: Forestry is an economically important industry in South Africa,involving extensive exotic plantations of Eucalyptus, Pinus and Acacia species. These tree species have fungal associations, such as ectomycorrhizas, that have become locally naturalized. The forestry industry is increasingly faced with problems of long-term sustainability, increasing soil acidity and depletion of soil nutrients. It is, therefore, essential that the fundamental importance of the ectomycorrhizal (ECM) symbioses in the nutrient cycling, growth, health and survival of these tree species should not be ignored. Research on the species diversity of ECM fungi associated with forestry plant species has been hampered by the difficulty of identifying the fungi involved in the symbiosis. This investigation focused on the ECM fungi associated with Pinus patula (Schlecht. et Cham.) grown in managed plantations in the Sabie region, Mpumalanga province, South Africa. ECM roots were morphotyped and DNA was extracted. The internal transcribed spacer (ITS) region was amplified using the ITS 1F and ITS 4 primers. The sequences were BLASTed using the GenBank and UNITE databases. Twenty-seven extractions were successfully amplified representing 17 different morphotypes. Of the 27 sequences, 21 were identified as ECM fungi and, from the BLAST results, eleven different ECM species could be identified. Selected ECM root types were morphologically and anatomically described according to root morphology, mantle structure, specialized hyphae and rhizomorph arrangement. Seven dominant field types were described and identified as two Amanita species, Scleroderma citrinum, a suilloid species, Thelephora terrestris, a tometelloid species and one resembled an Albatrellus species.
- Full Text:
- Date Issued: 2008
- Authors: Hawley, Greer L , Taylor, A F S , Dames, Joanna F
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6475 , http://hdl.handle.net/10962/d1006163 , http://www.scielo.org.za/scielo.php?pid=S0038-23532008000400011&script=sci_arttext
- Description: Forestry is an economically important industry in South Africa,involving extensive exotic plantations of Eucalyptus, Pinus and Acacia species. These tree species have fungal associations, such as ectomycorrhizas, that have become locally naturalized. The forestry industry is increasingly faced with problems of long-term sustainability, increasing soil acidity and depletion of soil nutrients. It is, therefore, essential that the fundamental importance of the ectomycorrhizal (ECM) symbioses in the nutrient cycling, growth, health and survival of these tree species should not be ignored. Research on the species diversity of ECM fungi associated with forestry plant species has been hampered by the difficulty of identifying the fungi involved in the symbiosis. This investigation focused on the ECM fungi associated with Pinus patula (Schlecht. et Cham.) grown in managed plantations in the Sabie region, Mpumalanga province, South Africa. ECM roots were morphotyped and DNA was extracted. The internal transcribed spacer (ITS) region was amplified using the ITS 1F and ITS 4 primers. The sequences were BLASTed using the GenBank and UNITE databases. Twenty-seven extractions were successfully amplified representing 17 different morphotypes. Of the 27 sequences, 21 were identified as ECM fungi and, from the BLAST results, eleven different ECM species could be identified. Selected ECM root types were morphologically and anatomically described according to root morphology, mantle structure, specialized hyphae and rhizomorph arrangement. Seven dominant field types were described and identified as two Amanita species, Scleroderma citrinum, a suilloid species, Thelephora terrestris, a tometelloid species and one resembled an Albatrellus species.
- Full Text:
- Date Issued: 2008