Biochemical characterization of the β-mannanase activity of Bacillus paralicheniformis SVD1
- Authors: Clarke, Matthew David
- Date: 2019
- Subjects: Mycobacterium avium paratuberculosis , Enzymes -- Biotechnology , Lignocellulose -- Biotechnology
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67570 , vital:29112
- Description: Products produced via the enzymatic hydrolysis of lignocellulosic biomass, the most abundant renewable terrestrial source of carbon, can potentially replace a lot of the fuels and chemicals currently produced using non-renewable hydrocarbons. Mannan is a polysaccharide component of lignocellulose that is abundant in softwoods and legume seeds. Enzymatic hydrolysis of mannan by β-mannanases has various industrial applications, including use in biofuel and prebiotic mannooligosaccharide (MOS) production for the improvement of human and animal health. The industrial use of β-mannanases depends on their biochemical characteristics, such as their activity, stability and substrate specificity. Knowledge of their synergistic interactions with other enzymes is also useful for effective hydrolysis. Bacillus paralicheniformis SVD1 was used as a source for β-mannanases. The two mannanases of B. paralicheniformis SVD1 have not been biochemically characterized apart from minor characterization of crude β-mannanase activity. The protein sequences of the two β-mannanases, of glycosyl hydrolase family 5 and 26, have a 95% - 96% identity to the β-mannanases of B. licheniformis DSM13T (=ATCC14580T). These small protein sequence differences could lead to quite different biochemical characteristics. These mannanases were characterized as these enzymes may have industrially useful characteristics. To induce mannanase production, B. paralicheniformis SVD1 was cultured in broth containing the mannan substrate locust bean gum. Various growth curve parameters were measured over 72 h. Mannanase activity was the highest after 48 h of growth - this was the time at which mannanase activity was concentrated, using 3 kDa centrifugal filtration devices, for biochemical characterization of the crude activity. Zymography revealed that the crude concentrated mannanase fraction consisted of at least two mannanases with relative molecular weights (MWs) of 29.6 kDa and 33 kDa. This was smaller than expected – based on their theoretical molecular masses. Protease activity, which was detected in the broth, was probably the reason. There were two pH optima, pH 5.0 and pH 7.0, which also indicated the presence of two mannanases. The concentrated mannanase displayed characteristics that were expected of a B. paralicheniformis β-mannanase. The temperature optimum was 50°C and the activity loss was less than 7% at 50°C after 24 h. Substrate specificity assays revealed that there was predominantly mannanase activity present. Thin layer chromatography (TLC) analysis of mannan and MOS hydrolysis showed that mainly M2 and M3 MOS were produced; only MOS with a degree of polymerization of 4 or higher were hydrolyzed. Hydrolysis was minimal on mannoligosaccharides with galactose substituents. Activity and MOS production was the highest on soluble, low branched mannan substrates. The highest activity observed was on konjac glucomannan. Purification of the mannanase activity was then attempted using various methods. Ammonium sulfate precipitation, acetone precipitation, as well as centrifugal filtration device concentration was assessed for concentration of the mannanase activity.Concentration was not very successful due to low activity yields (≤ 20%). Anion exchange chromatography (AEC) and size exclusion chromatography (SEC) was used for purification. AEC gave good activity yield and fold purification, but SDS-PAGE analysis revealed the presence of many different proteins so further purification was necessary. SDS-PAGE analysis showed that there were only a few protein contaminants in the SEC fraction. However, the yield was too low to allow for biochemical characterization. The optimized purification procedure, which partially purified the mannanase activity, used 85% ammonium sulfate precipitation, followed by AEC. The fold purification was high (88.9) and the specific activity was 29.5 U.mg-1. A zymogram of the partially purified mannanase showed a mannanase active band with a MW of 40 - 41 kDa. A serine protease inhibitor, phenylmethylsulfonyl fluoride (PMSF), was added during the purification steps. This indicated that the mannanase/s in the crude concentrate, without PMSF added, was hydrolyzed by serine protease activity. Native PAGE zymograms suggested that at least two different isoforms of mannanases were present. Additional purification would be required to determine the true characteristics of the mannanase/s. The biochemical characteristics of the crude and partially purified mannanases were similar. The pH optima of the partially purified mannanases were different; the pH optima were 6.0 and 9.0. The substrate specificities were similar, except that the partially purified mannanases displayed no cellulase and β-D-galactosidase activity, but showed a small amount of α-L-arabinase activity. The partially purified mannanase and a Cyamopsis tetragonolobus GH27 α-galactosidase synergistically hydrolyzed locust bean gum. The M50G50 combination displayed the highest extent of hydrolysis; after 24 h there was a 1.39 fold increase in reducing sugar release and the degree of synergy (DS) was 4.64. TLC analysis indicated that synergy increased the release of small MOS. These MOS could be useful as prebiotics. The synergy between the partially purified mannanase and the commercial cellulase mixture Cellic® CTec2 (Novozymes) on spent coffee grounds (SCG) was also determined. SCG is an abundant industrial waste product that has high mannan content. The SCG was pretreated using NaOH, and the monosaccharide, soluble phenolics and insoluble contents were determined. Glucose and mannose were the dominant monosaccharides in the SCG; the pretreated SCG contained 20.4% (w/w) glucose and 18.5% (w/w) mannose, respectively. The NaOH pretreatment improved mannanase hydrolysis of SCG. It resulted in the opening up and swelling of the SCG particles and removed some of the insoluble solids. The partially purified B. paralicheniformis SVD1 mannanase displayed no detectable activity on SCG, but showed synergy with CTec2, in terms of DS, on untreated and NaOH pretreated SCG. This is the first report of mannanasecellulase synergy on SCG; other studies found that increased hydrolysis was due to additive effects. The results obtained in this study are only an initial assessment of the biochemical properties of B. paralicheniformis SVD1 mannanase activity and its synergy with other enzymes. These results can be used to inform future studies.
- Full Text:
- Date Issued: 2019
- Authors: Clarke, Matthew David
- Date: 2019
- Subjects: Mycobacterium avium paratuberculosis , Enzymes -- Biotechnology , Lignocellulose -- Biotechnology
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67570 , vital:29112
- Description: Products produced via the enzymatic hydrolysis of lignocellulosic biomass, the most abundant renewable terrestrial source of carbon, can potentially replace a lot of the fuels and chemicals currently produced using non-renewable hydrocarbons. Mannan is a polysaccharide component of lignocellulose that is abundant in softwoods and legume seeds. Enzymatic hydrolysis of mannan by β-mannanases has various industrial applications, including use in biofuel and prebiotic mannooligosaccharide (MOS) production for the improvement of human and animal health. The industrial use of β-mannanases depends on their biochemical characteristics, such as their activity, stability and substrate specificity. Knowledge of their synergistic interactions with other enzymes is also useful for effective hydrolysis. Bacillus paralicheniformis SVD1 was used as a source for β-mannanases. The two mannanases of B. paralicheniformis SVD1 have not been biochemically characterized apart from minor characterization of crude β-mannanase activity. The protein sequences of the two β-mannanases, of glycosyl hydrolase family 5 and 26, have a 95% - 96% identity to the β-mannanases of B. licheniformis DSM13T (=ATCC14580T). These small protein sequence differences could lead to quite different biochemical characteristics. These mannanases were characterized as these enzymes may have industrially useful characteristics. To induce mannanase production, B. paralicheniformis SVD1 was cultured in broth containing the mannan substrate locust bean gum. Various growth curve parameters were measured over 72 h. Mannanase activity was the highest after 48 h of growth - this was the time at which mannanase activity was concentrated, using 3 kDa centrifugal filtration devices, for biochemical characterization of the crude activity. Zymography revealed that the crude concentrated mannanase fraction consisted of at least two mannanases with relative molecular weights (MWs) of 29.6 kDa and 33 kDa. This was smaller than expected – based on their theoretical molecular masses. Protease activity, which was detected in the broth, was probably the reason. There were two pH optima, pH 5.0 and pH 7.0, which also indicated the presence of two mannanases. The concentrated mannanase displayed characteristics that were expected of a B. paralicheniformis β-mannanase. The temperature optimum was 50°C and the activity loss was less than 7% at 50°C after 24 h. Substrate specificity assays revealed that there was predominantly mannanase activity present. Thin layer chromatography (TLC) analysis of mannan and MOS hydrolysis showed that mainly M2 and M3 MOS were produced; only MOS with a degree of polymerization of 4 or higher were hydrolyzed. Hydrolysis was minimal on mannoligosaccharides with galactose substituents. Activity and MOS production was the highest on soluble, low branched mannan substrates. The highest activity observed was on konjac glucomannan. Purification of the mannanase activity was then attempted using various methods. Ammonium sulfate precipitation, acetone precipitation, as well as centrifugal filtration device concentration was assessed for concentration of the mannanase activity.Concentration was not very successful due to low activity yields (≤ 20%). Anion exchange chromatography (AEC) and size exclusion chromatography (SEC) was used for purification. AEC gave good activity yield and fold purification, but SDS-PAGE analysis revealed the presence of many different proteins so further purification was necessary. SDS-PAGE analysis showed that there were only a few protein contaminants in the SEC fraction. However, the yield was too low to allow for biochemical characterization. The optimized purification procedure, which partially purified the mannanase activity, used 85% ammonium sulfate precipitation, followed by AEC. The fold purification was high (88.9) and the specific activity was 29.5 U.mg-1. A zymogram of the partially purified mannanase showed a mannanase active band with a MW of 40 - 41 kDa. A serine protease inhibitor, phenylmethylsulfonyl fluoride (PMSF), was added during the purification steps. This indicated that the mannanase/s in the crude concentrate, without PMSF added, was hydrolyzed by serine protease activity. Native PAGE zymograms suggested that at least two different isoforms of mannanases were present. Additional purification would be required to determine the true characteristics of the mannanase/s. The biochemical characteristics of the crude and partially purified mannanases were similar. The pH optima of the partially purified mannanases were different; the pH optima were 6.0 and 9.0. The substrate specificities were similar, except that the partially purified mannanases displayed no cellulase and β-D-galactosidase activity, but showed a small amount of α-L-arabinase activity. The partially purified mannanase and a Cyamopsis tetragonolobus GH27 α-galactosidase synergistically hydrolyzed locust bean gum. The M50G50 combination displayed the highest extent of hydrolysis; after 24 h there was a 1.39 fold increase in reducing sugar release and the degree of synergy (DS) was 4.64. TLC analysis indicated that synergy increased the release of small MOS. These MOS could be useful as prebiotics. The synergy between the partially purified mannanase and the commercial cellulase mixture Cellic® CTec2 (Novozymes) on spent coffee grounds (SCG) was also determined. SCG is an abundant industrial waste product that has high mannan content. The SCG was pretreated using NaOH, and the monosaccharide, soluble phenolics and insoluble contents were determined. Glucose and mannose were the dominant monosaccharides in the SCG; the pretreated SCG contained 20.4% (w/w) glucose and 18.5% (w/w) mannose, respectively. The NaOH pretreatment improved mannanase hydrolysis of SCG. It resulted in the opening up and swelling of the SCG particles and removed some of the insoluble solids. The partially purified B. paralicheniformis SVD1 mannanase displayed no detectable activity on SCG, but showed synergy with CTec2, in terms of DS, on untreated and NaOH pretreated SCG. This is the first report of mannanasecellulase synergy on SCG; other studies found that increased hydrolysis was due to additive effects. The results obtained in this study are only an initial assessment of the biochemical properties of B. paralicheniformis SVD1 mannanase activity and its synergy with other enzymes. These results can be used to inform future studies.
- Full Text:
- Date Issued: 2019
Biogenic synthesis of Silver nanoparticles (AgNPs) and its effects on Zebrafish (Danio rerio)
- Authors: Siguba, Busiswa
- Date: 2019
- Subjects: Biogenic synthesis -- Zebrafish , Nanoparticles – Silver , Zebrafish
- Language: English
- Type: Thesis , Masters , M Sc
- Identifier: http://hdl.handle.net/11260/1339 , vital:32260
- Description: The increase in use and production of engineered nanoparticles in recent years points towards their inevitable release into freshwater ecosystems. Subsequently, exposure to organisms in freshwater ecosystems is to be expected. The aim of this dissertation was to synthesize silver nanoparticles (AgNPs) using silver nitrate, gelatine and maltose as precursor, capping and reducing agent respectively. Cytotoxic effects of the as-synthesized AgNPs was evaluated at concentrations of 0.031 μg/L, 0.250 μg/L and 5.000 μg/L on selected target organs in zebrafish (Danio rerio ) after 96 hr of exposure, under a 24 hr static renewal system. Formation of AgNPs was investigated by UV-Vis spectrophotometry, which displayed absorption maxima peak characteristic of plasmon resonance band for silver at 419 nm. From transmission electron microscopy, AgNPs was found to be small, well dispersed and spherical in shape with a narrow size distribution, and an average particle size of3.76 ± 1.00 nm. Histopathological alterations following exposure to AgNPs was noticed in the gills, epidermis, muscle tissue and kidney. Secondary lamellae hypertrophy, oedema and epithelial lifting was observed in all experimental groups. Curling and clubbed tips of secondary lamellae were observed at the lowest concentration (0.031 μg/L). Hyperplasia and lamellae fusion was most common at the median concentration (0.250 μg/L) of AgNP exposure. Hypertrophy of endothelial cells along with blood vessel congestion was also observed. Reduced secondary lamellar length, lamellar erosion and thinning were observed at the highest concentration (5.000 μg/L).AgNP exposure also altered the shape of alarm cells. In addition, hyperplasia and hypertrophy of goblet cells were observed at the highest concentration (5.000 μg/L) at 96 hr. At 5.000 μg/L of AgNP, PAS reaction was intense (deep purple), while the number and size of these cells decreased. Staining with AB pH 2.5 demonstrated an intense deep purple staining at the lowest and at the median concentration (24 hr). Moderate staining was seen at the higher concentrations. Muscle bundles with severe oedema, their thickening and separation were more pronounced in all treated groups. Histopathological tubular deformation and mononuclear cell infiltration were observed in kidney tissues. In addition; an increase in melano‐macrophage aggregation intensity was identified on the 48 hr in the treated groups. An increase in tubular epithelial cell regeneration/ proliferation, resulting in production of new epithelial cells which was indicative of recovering of kidney tissues from AgNP induced injury at 96 hr of exposure. Results presented here shows that fish respond to the presence of AgNPs.
- Full Text:
- Date Issued: 2019
- Authors: Siguba, Busiswa
- Date: 2019
- Subjects: Biogenic synthesis -- Zebrafish , Nanoparticles – Silver , Zebrafish
- Language: English
- Type: Thesis , Masters , M Sc
- Identifier: http://hdl.handle.net/11260/1339 , vital:32260
- Description: The increase in use and production of engineered nanoparticles in recent years points towards their inevitable release into freshwater ecosystems. Subsequently, exposure to organisms in freshwater ecosystems is to be expected. The aim of this dissertation was to synthesize silver nanoparticles (AgNPs) using silver nitrate, gelatine and maltose as precursor, capping and reducing agent respectively. Cytotoxic effects of the as-synthesized AgNPs was evaluated at concentrations of 0.031 μg/L, 0.250 μg/L and 5.000 μg/L on selected target organs in zebrafish (Danio rerio ) after 96 hr of exposure, under a 24 hr static renewal system. Formation of AgNPs was investigated by UV-Vis spectrophotometry, which displayed absorption maxima peak characteristic of plasmon resonance band for silver at 419 nm. From transmission electron microscopy, AgNPs was found to be small, well dispersed and spherical in shape with a narrow size distribution, and an average particle size of3.76 ± 1.00 nm. Histopathological alterations following exposure to AgNPs was noticed in the gills, epidermis, muscle tissue and kidney. Secondary lamellae hypertrophy, oedema and epithelial lifting was observed in all experimental groups. Curling and clubbed tips of secondary lamellae were observed at the lowest concentration (0.031 μg/L). Hyperplasia and lamellae fusion was most common at the median concentration (0.250 μg/L) of AgNP exposure. Hypertrophy of endothelial cells along with blood vessel congestion was also observed. Reduced secondary lamellar length, lamellar erosion and thinning were observed at the highest concentration (5.000 μg/L).AgNP exposure also altered the shape of alarm cells. In addition, hyperplasia and hypertrophy of goblet cells were observed at the highest concentration (5.000 μg/L) at 96 hr. At 5.000 μg/L of AgNP, PAS reaction was intense (deep purple), while the number and size of these cells decreased. Staining with AB pH 2.5 demonstrated an intense deep purple staining at the lowest and at the median concentration (24 hr). Moderate staining was seen at the higher concentrations. Muscle bundles with severe oedema, their thickening and separation were more pronounced in all treated groups. Histopathological tubular deformation and mononuclear cell infiltration were observed in kidney tissues. In addition; an increase in melano‐macrophage aggregation intensity was identified on the 48 hr in the treated groups. An increase in tubular epithelial cell regeneration/ proliferation, resulting in production of new epithelial cells which was indicative of recovering of kidney tissues from AgNP induced injury at 96 hr of exposure. Results presented here shows that fish respond to the presence of AgNPs.
- Full Text:
- Date Issued: 2019
Bioinformatic analysis, isolation and kinetic characterisation of red algae (Gelidium capense) dehydrogenases
- Authors: Gogela, Yanga
- Date: 2019
- Subjects: Bioinformatics Chondrus crispus
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/19164 , vital:39878
- Description: Lactate and alcohol dehydrogenases have attracted much attention in various industries and scientific research for their ability to produce chirally pure compounds and be assayed for activity using more straightforward and reproducible assay methods. These enzymes have been previously isolated and purified from various plants, animals and microorganisms. So far, the molecular and biochemical properties of enzymes from these dehydrogenase families in red algae are mostly unknown. Red macroalgae have been used for centuries for the treatment of various diseases and as a source of ingredients in the food industry. The aim of this study was to identify genes in the sequenced red algae genomes that encode dehydrogenases, to use bioinformatic tools to confirm that the proteins encoded are dehydrogenases and to isolate and kinetically purify alcohol or lactate dehydrogenase from red algae species found along the coastline of the Eastern Cape Province. A combination of bioinformatics tools, molecular and biochemical techniques were used to identify, purify, and characterise ADH and LDH enzymes. Bioinformatics analysis revealed two alcohol dehydrogenase genes and two hypothetical genes encoding functional domains similar to D-lactate dehydrogenases from other species. The ADH and LDH-like genes shared low sequence identity at the protein level with medium-chain dehydrogenases/reductases (MDRs) and 2-hydroxy acid dehydrogenases, respectively. These two dehydrogenase genes showed a highly conserved NAD-binding motif (Rossmann-fold) similar to many other NAD-dependent dehydrogenases. The ADH and LDH proteins contained no signal peptides and may be located in the cytoplasm. The phylogenetic tree analysis showed that the two ADH genes belonged to cinnamyl and class III alcohol dehydrogenases, whereas the LDHlike genes were grouped with D-lactate dehydrogenases from other organisms. The ADH and LDH gene family showed cis-acting regulatory elements that are mostly involved in stress response and hormonal response. Structural analysis showed that the dehydrogenases 3D structure predicted models comprise of two domains, namely the substrate binding and the coenzyme binding domains that are rich in beta-strands secondary structure elements. The LDH from red algae was purified approximately 4-fold with a specific activity of 0.044 U/mg. The purified LDH enzyme had a molecular weight of approximately 37kDa. The LDH was active across a broad pH range from 5-9 with a pH optimum observed at 7.5. The LDH ii enzyme in red algae exhibits a temperature optimum of 40 ⁰C and heat stability up to 40 ⁰C. Above 50 °C the LDH activity rapidly decreased showing that the LDH in red algae is not thermostable. The LDH enzyme showed a Km value of 0.8 mM and Vmax of 0.0067 mM.min-1 when using sodium pyruvate as a substrate.
- Full Text:
- Date Issued: 2019
- Authors: Gogela, Yanga
- Date: 2019
- Subjects: Bioinformatics Chondrus crispus
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/19164 , vital:39878
- Description: Lactate and alcohol dehydrogenases have attracted much attention in various industries and scientific research for their ability to produce chirally pure compounds and be assayed for activity using more straightforward and reproducible assay methods. These enzymes have been previously isolated and purified from various plants, animals and microorganisms. So far, the molecular and biochemical properties of enzymes from these dehydrogenase families in red algae are mostly unknown. Red macroalgae have been used for centuries for the treatment of various diseases and as a source of ingredients in the food industry. The aim of this study was to identify genes in the sequenced red algae genomes that encode dehydrogenases, to use bioinformatic tools to confirm that the proteins encoded are dehydrogenases and to isolate and kinetically purify alcohol or lactate dehydrogenase from red algae species found along the coastline of the Eastern Cape Province. A combination of bioinformatics tools, molecular and biochemical techniques were used to identify, purify, and characterise ADH and LDH enzymes. Bioinformatics analysis revealed two alcohol dehydrogenase genes and two hypothetical genes encoding functional domains similar to D-lactate dehydrogenases from other species. The ADH and LDH-like genes shared low sequence identity at the protein level with medium-chain dehydrogenases/reductases (MDRs) and 2-hydroxy acid dehydrogenases, respectively. These two dehydrogenase genes showed a highly conserved NAD-binding motif (Rossmann-fold) similar to many other NAD-dependent dehydrogenases. The ADH and LDH proteins contained no signal peptides and may be located in the cytoplasm. The phylogenetic tree analysis showed that the two ADH genes belonged to cinnamyl and class III alcohol dehydrogenases, whereas the LDHlike genes were grouped with D-lactate dehydrogenases from other organisms. The ADH and LDH gene family showed cis-acting regulatory elements that are mostly involved in stress response and hormonal response. Structural analysis showed that the dehydrogenases 3D structure predicted models comprise of two domains, namely the substrate binding and the coenzyme binding domains that are rich in beta-strands secondary structure elements. The LDH from red algae was purified approximately 4-fold with a specific activity of 0.044 U/mg. The purified LDH enzyme had a molecular weight of approximately 37kDa. The LDH was active across a broad pH range from 5-9 with a pH optimum observed at 7.5. The LDH ii enzyme in red algae exhibits a temperature optimum of 40 ⁰C and heat stability up to 40 ⁰C. Above 50 °C the LDH activity rapidly decreased showing that the LDH in red algae is not thermostable. The LDH enzyme showed a Km value of 0.8 mM and Vmax of 0.0067 mM.min-1 when using sodium pyruvate as a substrate.
- Full Text:
- Date Issued: 2019
Biological monitoring in southern Africa: a review of the current status, challenges and future prospects
- Mangadze, Tinotenda, Dalu, Tatenda, Froneman, P William
- Authors: Mangadze, Tinotenda , Dalu, Tatenda , Froneman, P William
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/467193 , vital:76838 , https://doi.org/10.1016/j.scitotenv.2018.08.252
- Description: Biological monitoring programmes have gained popularity around the world particularly in southern Africa as they are fast, integrative and cost-effective approaches for assessing the effects of environmental stressors on aquatic ecosystems. This article reviews current efforts that have been made to use bioindicators (i.e. macroinvertebrates, diatoms and fish) in monitoring water resources and to summarise the challenges in employing these biological monitoring tools in southern Africa. In South Africa, macroinvertebrate (South African Scoring System (SASS)) and diatom based indices (e.g. South African diatom index (SADI)) have demonstrated their utility in identifying sources of impairment and determining the extent of impacts thus giving natural resource managers a scientifically defensible rationale for developing guidelines for conservation and management. Despite this advancement in South Africa, however, developing regionally appropriate quantitative tools for diagnosing ecosystem health is a pressing need for several other southern African countries. Together with sound scientific research, it is imperative for southern African countries to develop specific legislation and have mandated agencies, with proper training and funding to implement biomonitoring and bioassessments. We recommend for the advancement and adoption of biological criteria as an integrated approach to assessing the impact of human activities in riverine ecosystems of the southern African region.
- Full Text:
- Date Issued: 2019
- Authors: Mangadze, Tinotenda , Dalu, Tatenda , Froneman, P William
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/467193 , vital:76838 , https://doi.org/10.1016/j.scitotenv.2018.08.252
- Description: Biological monitoring programmes have gained popularity around the world particularly in southern Africa as they are fast, integrative and cost-effective approaches for assessing the effects of environmental stressors on aquatic ecosystems. This article reviews current efforts that have been made to use bioindicators (i.e. macroinvertebrates, diatoms and fish) in monitoring water resources and to summarise the challenges in employing these biological monitoring tools in southern Africa. In South Africa, macroinvertebrate (South African Scoring System (SASS)) and diatom based indices (e.g. South African diatom index (SADI)) have demonstrated their utility in identifying sources of impairment and determining the extent of impacts thus giving natural resource managers a scientifically defensible rationale for developing guidelines for conservation and management. Despite this advancement in South Africa, however, developing regionally appropriate quantitative tools for diagnosing ecosystem health is a pressing need for several other southern African countries. Together with sound scientific research, it is imperative for southern African countries to develop specific legislation and have mandated agencies, with proper training and funding to implement biomonitoring and bioassessments. We recommend for the advancement and adoption of biological criteria as an integrated approach to assessing the impact of human activities in riverine ecosystems of the southern African region.
- Full Text:
- Date Issued: 2019
Biological properties and interactions of Kalaharituber pfeilii
- Authors: Krele, Viwe
- Date: 2019
- Subjects: Kalaharituber pfeilii , Pezizales -- South Africa , Desert plants -- South Africa , Truffle culture -- South Africa , Plant biochemical genetics , Enzymes -- Analysis
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72257 , vital:30022
- Description: Dessert truffles are seasonal macro fungi and have been identified in several parts of the world including South Africa. The first part of the present study dealt with the assessment of the biologically active compounds of the Kalahari truffles found in the Northern Cape of South Africa. Truffles extracts (methanol, ethanol, aqueous) were investigated for their antimicrobial properties towards Gram-positive and Gram-negative bacteria. The results demonstrated that the truffle extracts tested had no inhibitory effects against the bacterial isolates. The truffle mycelial growth was also noted to be ineffective against the selected bacteria. The bacteria tested in the present study showed some antagonistic effects against the fungus. Cultures of K. pfeilii were also screened for enzyme production including amylase, protease, cellulose, and laccase. Evaluation of the potential of K. pfeilii mycelia to produce these industrially and economically important enzymes demonstrated both amylase and protease activity. However, for laccase and cellulose, no activity was detected. The second part of the present study aimed at optimizing biomass production by K. pfeilii in liquid culture media. FF Microplate containing 95 discreet carbon sources were employed to test for substrate utilization. Blanked readings above 0.1 were regarded as positive for utilization, and 4 substrates were selected as potential substrates and were included in liquid media. Media was evaluated for mycelial biomass production. Of the carbon sources tested sucrose proved to be the most suitable for supporting mycelial growth. The third part of the current study included investigating the diversity of microbial communities colonizing the rhizosheath of Stipagrostis ciliata var. capensis (the host plant of K. pfeilii) and these were identified by means of next-generation sequencing using Illumina Miseq. Bioinformatics tools were utilized in analyzing the data. Actinobacteria were found to be the most dominant bacterial phylum, followed by unclassified bacteria, Proteobacteria, and Acidobacteria. The top 25 sequences were selected and clustered into bacterial OTUs (at 97% threshold) which were assigned into 1 phylum (Actinobacteria), 1 family (Geodermatophilaceae) and 23 genera. This phylum is well known for its secondary metabolites. Streptomyces sp. was the most frequently encountered genus. The results from this study necessitate further investigations with regards to the function and evolution of fungal-bacterial associations. Wheather these bacteria have a contribution towards the truffle development, it is still not confirmed.
- Full Text:
- Date Issued: 2019
- Authors: Krele, Viwe
- Date: 2019
- Subjects: Kalaharituber pfeilii , Pezizales -- South Africa , Desert plants -- South Africa , Truffle culture -- South Africa , Plant biochemical genetics , Enzymes -- Analysis
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72257 , vital:30022
- Description: Dessert truffles are seasonal macro fungi and have been identified in several parts of the world including South Africa. The first part of the present study dealt with the assessment of the biologically active compounds of the Kalahari truffles found in the Northern Cape of South Africa. Truffles extracts (methanol, ethanol, aqueous) were investigated for their antimicrobial properties towards Gram-positive and Gram-negative bacteria. The results demonstrated that the truffle extracts tested had no inhibitory effects against the bacterial isolates. The truffle mycelial growth was also noted to be ineffective against the selected bacteria. The bacteria tested in the present study showed some antagonistic effects against the fungus. Cultures of K. pfeilii were also screened for enzyme production including amylase, protease, cellulose, and laccase. Evaluation of the potential of K. pfeilii mycelia to produce these industrially and economically important enzymes demonstrated both amylase and protease activity. However, for laccase and cellulose, no activity was detected. The second part of the present study aimed at optimizing biomass production by K. pfeilii in liquid culture media. FF Microplate containing 95 discreet carbon sources were employed to test for substrate utilization. Blanked readings above 0.1 were regarded as positive for utilization, and 4 substrates were selected as potential substrates and were included in liquid media. Media was evaluated for mycelial biomass production. Of the carbon sources tested sucrose proved to be the most suitable for supporting mycelial growth. The third part of the current study included investigating the diversity of microbial communities colonizing the rhizosheath of Stipagrostis ciliata var. capensis (the host plant of K. pfeilii) and these were identified by means of next-generation sequencing using Illumina Miseq. Bioinformatics tools were utilized in analyzing the data. Actinobacteria were found to be the most dominant bacterial phylum, followed by unclassified bacteria, Proteobacteria, and Acidobacteria. The top 25 sequences were selected and clustered into bacterial OTUs (at 97% threshold) which were assigned into 1 phylum (Actinobacteria), 1 family (Geodermatophilaceae) and 23 genera. This phylum is well known for its secondary metabolites. Streptomyces sp. was the most frequently encountered genus. The results from this study necessitate further investigations with regards to the function and evolution of fungal-bacterial associations. Wheather these bacteria have a contribution towards the truffle development, it is still not confirmed.
- Full Text:
- Date Issued: 2019
Black forest
- Authors: Sachikonye, Tsitsi S A
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/92759 , vital:30745
- Full Text:
- Date Issued: 2019
- Authors: Sachikonye, Tsitsi S A
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/92759 , vital:30745
- Full Text:
- Date Issued: 2019
Block copolymer templates for metal oxide nanostructures
- Authors: Talla, Assane
- Date: 2019
- Subjects: Nanotechnology , Nanostructured materials Metal oxide semiconductors
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/43889 , vital:37075
- Description: Recent advances in technology have increased the need for fabrication of devices with feature sizes of tens of nanometers, such as ultra-fine filters or membranes, and high density data storage media, to name a few. For this reason, research is now focused on block copolymer nanolithographic processes, particularly the fabrication of nanoscale templates with domains well below 100 nm. Block copolymers have the tendency to self-organise into various structures, such as lamellae, spheres or cylinders on a nanometer scale. Among these possible configurations, the perpendicular cylindrical structure is most desirable, because it can be used for templates or masks for feature development, in particular, oriented wires or rods. In this work, the aim is to create a nano-mask from a di-block copolymer thin film, for zinc oxide nanorods growth. For this purpose poly (styrene-block-methylmethacrylate) (PS-b-PMMA) was investigated as a potential nano-mask. Samples were characterized using X-ray reflectometry to determine the thicknesses of the PS-b-PMMA thin films, while scanning probe microscopy and scanning electron microscopy was used to investigate the surface morphology of the samples. PS-b-PMMA thin films were produced on a random copolymer (poly (styrene-random-methylmethacrylate) (PS-r-PMMA) coated onto a silicon substrate. The PS-r-PMMA permits a non-preferential interaction between the di-block constituents and the substrate. Thermal annealing in vacuum of PS-b-PMMA on PS-r-PMMA led to perpendicular cylinders of PMMA within a PS matrix in the di-block. The typical thicknesses measured for the di-block copolymer films ranged between 33 nm and 37 nm. During this study, a perpendicular orientation of the di-block components was also produced when PS-b-PMMA was spun onto a layer of zinc oxide nanoparticles and thermally annealed in vacuum. It was shown that the ZnO nanoparticles created a corrugated surface on silicon which induced perpendicular cylinders of PMMA within the PS matrix. This was possible for a specific surface roughness parameter and film thickness. In this case, the typical thickness determined for the di-block copolymer ranged between 33 and 35 nm and the surface roughness parameter was 0.07. For the fabrication of a di-block template or PS nano-mask, the vertically oriented PMMA cylindrical nanodomains in the PS matrix were removed by exposing the film to ultraviolet radiation at an adequate dose, followed successively by washing in acetic acid and de-ionized water. It was shown that ultraviolet exposure is necessary to ensure the degradation of PMMA. A subsequent rinse in glacial acetic acid and DI water of the film exposed to ultraviolet, left an array of ordered nanoscopic pores with sizes ranging between 10 nm and 20 nm. Finally, the growth of ZnO nanorods on the di-block template produced on zinc oxide nanoparticles, was attempted using an aqueous solution based-method, namely chemical bath deposition. The rods did not grow inside the nanopores, probably due to poor capillary action. In additional experiments, the di-block template was removed by toluene (a selective solvent for PS) followed by the growth of ZnO rods on the exposed nanoparticle surface. Vertical and well separated ZnO rods formed on this surface, in places where the underlying seed layer had been attacked by the acetic acid treatment during removal of the PMMA. The observed ZnO rod morphology can be used in applications such as solar cell.
- Full Text:
- Date Issued: 2019
- Authors: Talla, Assane
- Date: 2019
- Subjects: Nanotechnology , Nanostructured materials Metal oxide semiconductors
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/43889 , vital:37075
- Description: Recent advances in technology have increased the need for fabrication of devices with feature sizes of tens of nanometers, such as ultra-fine filters or membranes, and high density data storage media, to name a few. For this reason, research is now focused on block copolymer nanolithographic processes, particularly the fabrication of nanoscale templates with domains well below 100 nm. Block copolymers have the tendency to self-organise into various structures, such as lamellae, spheres or cylinders on a nanometer scale. Among these possible configurations, the perpendicular cylindrical structure is most desirable, because it can be used for templates or masks for feature development, in particular, oriented wires or rods. In this work, the aim is to create a nano-mask from a di-block copolymer thin film, for zinc oxide nanorods growth. For this purpose poly (styrene-block-methylmethacrylate) (PS-b-PMMA) was investigated as a potential nano-mask. Samples were characterized using X-ray reflectometry to determine the thicknesses of the PS-b-PMMA thin films, while scanning probe microscopy and scanning electron microscopy was used to investigate the surface morphology of the samples. PS-b-PMMA thin films were produced on a random copolymer (poly (styrene-random-methylmethacrylate) (PS-r-PMMA) coated onto a silicon substrate. The PS-r-PMMA permits a non-preferential interaction between the di-block constituents and the substrate. Thermal annealing in vacuum of PS-b-PMMA on PS-r-PMMA led to perpendicular cylinders of PMMA within a PS matrix in the di-block. The typical thicknesses measured for the di-block copolymer films ranged between 33 nm and 37 nm. During this study, a perpendicular orientation of the di-block components was also produced when PS-b-PMMA was spun onto a layer of zinc oxide nanoparticles and thermally annealed in vacuum. It was shown that the ZnO nanoparticles created a corrugated surface on silicon which induced perpendicular cylinders of PMMA within the PS matrix. This was possible for a specific surface roughness parameter and film thickness. In this case, the typical thickness determined for the di-block copolymer ranged between 33 and 35 nm and the surface roughness parameter was 0.07. For the fabrication of a di-block template or PS nano-mask, the vertically oriented PMMA cylindrical nanodomains in the PS matrix were removed by exposing the film to ultraviolet radiation at an adequate dose, followed successively by washing in acetic acid and de-ionized water. It was shown that ultraviolet exposure is necessary to ensure the degradation of PMMA. A subsequent rinse in glacial acetic acid and DI water of the film exposed to ultraviolet, left an array of ordered nanoscopic pores with sizes ranging between 10 nm and 20 nm. Finally, the growth of ZnO nanorods on the di-block template produced on zinc oxide nanoparticles, was attempted using an aqueous solution based-method, namely chemical bath deposition. The rods did not grow inside the nanopores, probably due to poor capillary action. In additional experiments, the di-block template was removed by toluene (a selective solvent for PS) followed by the growth of ZnO rods on the exposed nanoparticle surface. Vertical and well separated ZnO rods formed on this surface, in places where the underlying seed layer had been attacked by the acetic acid treatment during removal of the PMMA. The observed ZnO rod morphology can be used in applications such as solar cell.
- Full Text:
- Date Issued: 2019
Blockchain potential and disruptors for South Africa towards 2030
- Authors: Muntean, George
- Date: 2019
- Subjects: Electronic funds transfers -- Security measures , Blockchains (Databases) Finance -- Technological innovations Technological innovations -- Economic aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MBA
- Identifier: http://hdl.handle.net/10948/41603 , vital:36544
- Description: Blockchain (also called distributed ledger technology), the technology that underpins cryptocurrencies, is resulting in a new era of openness, decentralisation and global inclusion (World Economic Forum, 2017). Blockchain technology is set to complement another emerging field or group of technologies which are collectively defined as the Fourth Industrial Revolution. This revolution is characterised by a “range of new technologies that are blending the physical, digital and biological worlds, impacting all disciplines, economies and industries, and even challenging ideas about what it means to be human” (World Economic Forum, 2017). Certain features of Blockchain technology namely; decentralisation, implied anonymity, transparency and immutability presents people with a technology that may well transform business models and indeed entire industries in the world and in South Africa. Some of these industries are explored further in this research, delving into ideas of how Blockchains may add value to them. This research effort approaches Blockchain technology from a future studies perspective, and assesses whether South Africa is ready to embrace the technology. The research also explores what South African stakeholders can do to be better prepared for expected disruptors and opportunities that the technology will bring. South Africa is seen as a developing nation in the global context and can well benefit from strategic use of emerging technologies such as Blockchain. This research effort will implement Inayatullah’s (2008) six pillars methodology, incorporating the various tools and methodologies within each pillar, in an effort to describe and present possible future scenarios for Blockchains in South Africa. This insight will be used to provide well thought out strategic recommendations for South Africa to prepare for adoption of Blockchain technologies, which could ultimately provide a competitive advantage for the country in the global marketplace.
- Full Text:
- Date Issued: 2019
- Authors: Muntean, George
- Date: 2019
- Subjects: Electronic funds transfers -- Security measures , Blockchains (Databases) Finance -- Technological innovations Technological innovations -- Economic aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MBA
- Identifier: http://hdl.handle.net/10948/41603 , vital:36544
- Description: Blockchain (also called distributed ledger technology), the technology that underpins cryptocurrencies, is resulting in a new era of openness, decentralisation and global inclusion (World Economic Forum, 2017). Blockchain technology is set to complement another emerging field or group of technologies which are collectively defined as the Fourth Industrial Revolution. This revolution is characterised by a “range of new technologies that are blending the physical, digital and biological worlds, impacting all disciplines, economies and industries, and even challenging ideas about what it means to be human” (World Economic Forum, 2017). Certain features of Blockchain technology namely; decentralisation, implied anonymity, transparency and immutability presents people with a technology that may well transform business models and indeed entire industries in the world and in South Africa. Some of these industries are explored further in this research, delving into ideas of how Blockchains may add value to them. This research effort approaches Blockchain technology from a future studies perspective, and assesses whether South Africa is ready to embrace the technology. The research also explores what South African stakeholders can do to be better prepared for expected disruptors and opportunities that the technology will bring. South Africa is seen as a developing nation in the global context and can well benefit from strategic use of emerging technologies such as Blockchain. This research effort will implement Inayatullah’s (2008) six pillars methodology, incorporating the various tools and methodologies within each pillar, in an effort to describe and present possible future scenarios for Blockchains in South Africa. This insight will be used to provide well thought out strategic recommendations for South Africa to prepare for adoption of Blockchain technologies, which could ultimately provide a competitive advantage for the country in the global marketplace.
- Full Text:
- Date Issued: 2019
Bloodmeal analysis in Culicoides midges collected near horses, donkeys and zebras in the Eastern Cape, South Africa:
- Riddin, Megan A, Venter, G J, Labuschagne, K, Villet, Martin H
- Authors: Riddin, Megan A , Venter, G J , Labuschagne, K , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140692 , vital:37910 , DOI: 10.1111/mve.12381
- Description: An upsurge in African horse sickness (AHS) in the Eastern Cape, South Africa, from 2006 led to an epidemiological reassessment of the disease there. Light trapping surveys carried out near horses, donkeys and zebras in 2014–2016 collected 39 species of Culicoides midge (Diptera: Ceratopogonidae) that are potential vectors of AHS. To establish if these midges fed on equids, DNA sequences were obtained from the gut contents of 52 female midges (35 freshly blood-fed, 13 gravid and four parous), representing 11 species collected across 11 sites. Culicoides leucostictus fed on all three equids. Culicoides bolitinos, Culicoides imicola and Culicoides magnus fed on both horses and donkeys. Culicoides onderstepoortensis fed on donkeys, and Culicoides similis and Culicoides pycnostictus fed on zebras. Bloodmeals from cows, pigs, warthogs, impalas and a domestic dog were also identified in various species, but none of the midges tested had fed on birds. These results contribute to knowledge of the vectorial capacity of several species of Culicoides with regard to AHS in the Eastern Cape and point to potential reservoir hosts, of which donkeys, zebras and domestic dogs have previously been found to harbour AHS. Blood-fed midges were also obtained throughout winter, indicating the potential for endemic AHS in the province.
- Full Text:
- Date Issued: 2019
- Authors: Riddin, Megan A , Venter, G J , Labuschagne, K , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140692 , vital:37910 , DOI: 10.1111/mve.12381
- Description: An upsurge in African horse sickness (AHS) in the Eastern Cape, South Africa, from 2006 led to an epidemiological reassessment of the disease there. Light trapping surveys carried out near horses, donkeys and zebras in 2014–2016 collected 39 species of Culicoides midge (Diptera: Ceratopogonidae) that are potential vectors of AHS. To establish if these midges fed on equids, DNA sequences were obtained from the gut contents of 52 female midges (35 freshly blood-fed, 13 gravid and four parous), representing 11 species collected across 11 sites. Culicoides leucostictus fed on all three equids. Culicoides bolitinos, Culicoides imicola and Culicoides magnus fed on both horses and donkeys. Culicoides onderstepoortensis fed on donkeys, and Culicoides similis and Culicoides pycnostictus fed on zebras. Bloodmeals from cows, pigs, warthogs, impalas and a domestic dog were also identified in various species, but none of the midges tested had fed on birds. These results contribute to knowledge of the vectorial capacity of several species of Culicoides with regard to AHS in the Eastern Cape and point to potential reservoir hosts, of which donkeys, zebras and domestic dogs have previously been found to harbour AHS. Blood-fed midges were also obtained throughout winter, indicating the potential for endemic AHS in the province.
- Full Text:
- Date Issued: 2019
BODIPY and porphyrin dyes for direct glucose sensing and optical limiting applications
- Authors: Ndebele, Nobuhle
- Date: 2019
- Subjects: Boron compounds , Boric acid , Porphyrins , Dyes and dying -- Chemistry
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/97221 , vital:31412
- Description: A series of BODIPY dyes functionalised with boronic acid in the 3,5-positions were successfully synthesised and characterised by using various analytical techniques. The dyes were prepared through a slight modification of the conventional acid catalysed condensation method. Phenylboronic acid moieties were added as styryl groups at the 3,5-positions of the 1,3,5,7-tetrametylBODIPY cores using a modified Knoevengal condensation method. The addition of the styryls resulted in the main absorption band of the dyes red-shifting to the 630−650 nm region. The photophysical and electrochemical properties of these dyes were studied to determine whether the dyes are suitable for use in the fluorescent, colourimetric and electrochemical detection of glucose. Boronic acid moieties were added as bioreceptor recognition elements because they have an affinity for carbohydrates and therefore would be able to bind and “detect” glucose. The series of BODIPY dyes did not show a “turn-on” fluorescence effect upon addition with glucose at the physiological pH. This was attributed on the basis of molecular modelling to the absence of an MO localised on the boronic-acid-substituted styryl moieties that lie close in energy to the HOMO and LUMO that facilitates the formation of an intramolecular charge transfer state. However, colourimetric changes that are visible to the naked eye are observed at basic pH when glucose was added to the dye solutions. The dyes exhibited favourable electrochemical behaviour and were able to detect glucose directly in this context when glassy carbon electrodes are modified through the drop dry method. A series of Sn(IV) porphyrins with thienyl and phenyl groups at the meso-positions were successfully synthesised and characterised. Pyridine and tetrabutyl axial ligands were added to the porphyrins to limit aggregation. The optical limiting properties of these porphyrins and three styrylated BODIPY dyes were studied in benzene and dichloromethane. Dyes were also embedded in polystyrene and studied as thin films to further gauge their suitability for use in optical limiting applications. Second-order hyperpolarizability, third-order susceptibly, non-linear absorption with reversible saturable absorption and the optical limiting threshold, were the parameters studied. Three of the four porphyrins and the three styrylated BODIPY dyes showed favourable optical limiting behaviour, which was further enhanced when the dyes are embedded in polymer thin films.
- Full Text:
- Date Issued: 2019
- Authors: Ndebele, Nobuhle
- Date: 2019
- Subjects: Boron compounds , Boric acid , Porphyrins , Dyes and dying -- Chemistry
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/97221 , vital:31412
- Description: A series of BODIPY dyes functionalised with boronic acid in the 3,5-positions were successfully synthesised and characterised by using various analytical techniques. The dyes were prepared through a slight modification of the conventional acid catalysed condensation method. Phenylboronic acid moieties were added as styryl groups at the 3,5-positions of the 1,3,5,7-tetrametylBODIPY cores using a modified Knoevengal condensation method. The addition of the styryls resulted in the main absorption band of the dyes red-shifting to the 630−650 nm region. The photophysical and electrochemical properties of these dyes were studied to determine whether the dyes are suitable for use in the fluorescent, colourimetric and electrochemical detection of glucose. Boronic acid moieties were added as bioreceptor recognition elements because they have an affinity for carbohydrates and therefore would be able to bind and “detect” glucose. The series of BODIPY dyes did not show a “turn-on” fluorescence effect upon addition with glucose at the physiological pH. This was attributed on the basis of molecular modelling to the absence of an MO localised on the boronic-acid-substituted styryl moieties that lie close in energy to the HOMO and LUMO that facilitates the formation of an intramolecular charge transfer state. However, colourimetric changes that are visible to the naked eye are observed at basic pH when glucose was added to the dye solutions. The dyes exhibited favourable electrochemical behaviour and were able to detect glucose directly in this context when glassy carbon electrodes are modified through the drop dry method. A series of Sn(IV) porphyrins with thienyl and phenyl groups at the meso-positions were successfully synthesised and characterised. Pyridine and tetrabutyl axial ligands were added to the porphyrins to limit aggregation. The optical limiting properties of these porphyrins and three styrylated BODIPY dyes were studied in benzene and dichloromethane. Dyes were also embedded in polystyrene and studied as thin films to further gauge their suitability for use in optical limiting applications. Second-order hyperpolarizability, third-order susceptibly, non-linear absorption with reversible saturable absorption and the optical limiting threshold, were the parameters studied. Three of the four porphyrins and the three styrylated BODIPY dyes showed favourable optical limiting behaviour, which was further enhanced when the dyes are embedded in polymer thin films.
- Full Text:
- Date Issued: 2019
Bolvedere: a scalable network flow threat analysis system
- Authors: Herbert, Alan
- Date: 2019
- Subjects: Bolvedere (Computer network analysis system) , Computer networks -- Scalability , Computer networks -- Measurement , Computer networks -- Security measures , Telecommunication -- Traffic -- Measurement
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/71557 , vital:29873
- Description: Since the advent of the Internet, and its public availability in the late 90’s, there have been significant advancements to network technologies and thus a significant increase of the bandwidth available to network users, both human and automated. Although this growth is of great value to network users, it has led to an increase in malicious network-based activities and it is theorized that, as more services become available on the Internet, the volume of such activities will continue to grow. Because of this, there is a need to monitor, comprehend, discern, understand and (where needed) respond to events on networks worldwide. Although this line of thought is simple in its reasoning, undertaking such a task is no small feat. Full packet analysis is a method of network surveillance that seeks out specific characteristics within network traffic that may tell of malicious activity or anomalies in regular network usage. It is carried out within firewalls and implemented through packet classification. In the context of the networks that make up the Internet, this form of packet analysis has become infeasible, as the volume of traffic introduced onto these networks every day is so large that there are simply not enough processing resources to perform such a task on every packet in real time. One could combat this problem by performing post-incident forensics; archiving packets and processing them later. However, as one cannot process all incoming packets, the archive will eventually run out of space. Full packet analysis is also hindered by the fact that some existing, commonly-used solutions are designed around a single host and single thread of execution, an outdated approach that is far slower than necessary on current computing technology. This research explores the conceptual design and implementation of a scalable network traffic analysis system named Bolvedere. Analysis performed by Bolvedere simply asks whether the existence of a connection, coupled with its associated metadata, is enough to conclude something meaningful about that connection. This idea draws away from the traditional processing of every single byte in every single packet monitored on a network link (Deep Packet Inspection) through the concept of working with connection flows. Bolvedere performs its work by leveraging the NetFlow version 9 and IPFIX protocols, but is not limited to these. It is implemented using a modular approach that allows for either complete execution of the system on a single host or the horizontal scaling out of subsystems on multiple hosts. The use of multiple hosts is achieved through the implementation of Zero Message Queue (ZMQ). This allows for Bolvedre to horizontally scale out, which results in an increase in processing resources and thus an increase in analysis throughput. This is due to ease of interprocess communications provided by ZMQ. Many underlying mechanisms in Bolvedere have been automated. This is intended to make the system more userfriendly, as the user need only tell Bolvedere what information they wish to analyse, and the system will then rebuild itself in order to achieve this required task. Bolvedere has also been hardware-accelerated through the use of Field-Programmable Gate Array (FPGA) technologies, which more than doubled the total throughput of the system.
- Full Text:
- Date Issued: 2019
- Authors: Herbert, Alan
- Date: 2019
- Subjects: Bolvedere (Computer network analysis system) , Computer networks -- Scalability , Computer networks -- Measurement , Computer networks -- Security measures , Telecommunication -- Traffic -- Measurement
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/71557 , vital:29873
- Description: Since the advent of the Internet, and its public availability in the late 90’s, there have been significant advancements to network technologies and thus a significant increase of the bandwidth available to network users, both human and automated. Although this growth is of great value to network users, it has led to an increase in malicious network-based activities and it is theorized that, as more services become available on the Internet, the volume of such activities will continue to grow. Because of this, there is a need to monitor, comprehend, discern, understand and (where needed) respond to events on networks worldwide. Although this line of thought is simple in its reasoning, undertaking such a task is no small feat. Full packet analysis is a method of network surveillance that seeks out specific characteristics within network traffic that may tell of malicious activity or anomalies in regular network usage. It is carried out within firewalls and implemented through packet classification. In the context of the networks that make up the Internet, this form of packet analysis has become infeasible, as the volume of traffic introduced onto these networks every day is so large that there are simply not enough processing resources to perform such a task on every packet in real time. One could combat this problem by performing post-incident forensics; archiving packets and processing them later. However, as one cannot process all incoming packets, the archive will eventually run out of space. Full packet analysis is also hindered by the fact that some existing, commonly-used solutions are designed around a single host and single thread of execution, an outdated approach that is far slower than necessary on current computing technology. This research explores the conceptual design and implementation of a scalable network traffic analysis system named Bolvedere. Analysis performed by Bolvedere simply asks whether the existence of a connection, coupled with its associated metadata, is enough to conclude something meaningful about that connection. This idea draws away from the traditional processing of every single byte in every single packet monitored on a network link (Deep Packet Inspection) through the concept of working with connection flows. Bolvedere performs its work by leveraging the NetFlow version 9 and IPFIX protocols, but is not limited to these. It is implemented using a modular approach that allows for either complete execution of the system on a single host or the horizontal scaling out of subsystems on multiple hosts. The use of multiple hosts is achieved through the implementation of Zero Message Queue (ZMQ). This allows for Bolvedre to horizontally scale out, which results in an increase in processing resources and thus an increase in analysis throughput. This is due to ease of interprocess communications provided by ZMQ. Many underlying mechanisms in Bolvedere have been automated. This is intended to make the system more userfriendly, as the user need only tell Bolvedere what information they wish to analyse, and the system will then rebuild itself in order to achieve this required task. Bolvedere has also been hardware-accelerated through the use of Field-Programmable Gate Array (FPGA) technologies, which more than doubled the total throughput of the system.
- Full Text:
- Date Issued: 2019
Book Review: From the Outside In
- Authors: Magadla, Siphokazi
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/298628 , vital:57722 , xlink:href="https://doi.org/10.1080/10220461.2019.1610042"
- Description: From the Outside In: Domestic Actors and South Africa’s Foreign Policy presents an exciting collection of chapters that explore various and often-ignored domestic actors and their relationships within the state, including government departments and local government; and non-governmental organisations such as labour unions, big business and social movements. The editors evoke the imagery of the ‘chess game of foreign policy’, used by scholars such as Joseph Nye,1 to argue that power in international relations is distributed like a ‘three-dimensional chessboard’ consisting of military power, economic power and transnational relations.
- Full Text:
- Date Issued: 2019
- Authors: Magadla, Siphokazi
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/298628 , vital:57722 , xlink:href="https://doi.org/10.1080/10220461.2019.1610042"
- Description: From the Outside In: Domestic Actors and South Africa’s Foreign Policy presents an exciting collection of chapters that explore various and often-ignored domestic actors and their relationships within the state, including government departments and local government; and non-governmental organisations such as labour unions, big business and social movements. The editors evoke the imagery of the ‘chess game of foreign policy’, used by scholars such as Joseph Nye,1 to argue that power in international relations is distributed like a ‘three-dimensional chessboard’ consisting of military power, economic power and transnational relations.
- Full Text:
- Date Issued: 2019
Book Review: Herman Wasserman, Media, Geopolitics and Power
- Authors: Garman, Anthea
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158449 , vital:40187 , https://0-doi.org.wam.seals.ac.za/10.1177/0021909619851645
- Description: The strength of this book is not only that Herman Wasserman gives us a comprehensive overview of the major changes in South Africa’s journalism industries since the transition to democracy, but that he does it through the theoretical lens of Global South thinking. In order to cover the terrain thoroughly Wasserman draws on years of careful observation of – and his previous writings on – the shifts in the institutions and practices of journalism.
- Full Text:
- Date Issued: 2019
- Authors: Garman, Anthea
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158449 , vital:40187 , https://0-doi.org.wam.seals.ac.za/10.1177/0021909619851645
- Description: The strength of this book is not only that Herman Wasserman gives us a comprehensive overview of the major changes in South Africa’s journalism industries since the transition to democracy, but that he does it through the theoretical lens of Global South thinking. In order to cover the terrain thoroughly Wasserman draws on years of careful observation of – and his previous writings on – the shifts in the institutions and practices of journalism.
- Full Text:
- Date Issued: 2019
Bootstrap-based tolerance intervals for photovoltaic energy yield assessments
- Authors: Deyzel, Jani Igna
- Date: 2019
- Subjects: Bootstrap (Statistics) , Mathematical statistics Photovoltaic power systems
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39469 , vital:35256
- Description: The assessment of the energy yield of a photovoltaic (PV) system is one of the key assessments required by investors and developers. Currently, available methods used for this assessment only provide a point estimate as the final assessment. This study proposes a statistical technique which provides an additional energy yield assessment method by using tolerance intervals. Variance component models are used to better account for the variability present in the daily and hourly energy yields of three different PV modules. A bootstrap-based technique is used to obtain 𝛽-expectation and (𝛼,𝛽) two-sided tolerance intervals. These tolerance intervals provided more information with a content and confidence level for seasonal and yearly time-periods. In addition, the comparisons of the PV modules provide valuable information to investors and developers.
- Full Text:
- Date Issued: 2019
- Authors: Deyzel, Jani Igna
- Date: 2019
- Subjects: Bootstrap (Statistics) , Mathematical statistics Photovoltaic power systems
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39469 , vital:35256
- Description: The assessment of the energy yield of a photovoltaic (PV) system is one of the key assessments required by investors and developers. Currently, available methods used for this assessment only provide a point estimate as the final assessment. This study proposes a statistical technique which provides an additional energy yield assessment method by using tolerance intervals. Variance component models are used to better account for the variability present in the daily and hourly energy yields of three different PV modules. A bootstrap-based technique is used to obtain 𝛽-expectation and (𝛼,𝛽) two-sided tolerance intervals. These tolerance intervals provided more information with a content and confidence level for seasonal and yearly time-periods. In addition, the comparisons of the PV modules provide valuable information to investors and developers.
- Full Text:
- Date Issued: 2019
Boundary-crossing learning in agricultural learning systems: formative interventions for water and seed provision in southern Africa
- Authors: Pesanayi, Victor Tichaona
- Date: 2019
- Subjects: Agriultural extension work -- Africa, Southern , Agriultural colleges -- Africa, Southern , Farmers -- Education -- Africa, Southern , Agriculture and state -- Africa, Southern , Sustainable agriculture -- Africa, Southern
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/94067 , vital:30997
- Description: This research was conducted in the Amathole rural district of the Eastern Cape Province of South Africa, and in Zvishavane and Zhombe rural districts of the Midlands Province of Zimbabwe over a period of four years. In the first two years of this period I was involved in co-engaged boundary-crossing expansive learning processes with research participants from agricultural education (agricultural college lecturers, principals and university lecturers), extension services (extension officers, advisors and workers), small-scale farmers and a local economic development (LED) agency as agricultural learning activity systems. The latter was applicable only to the South African nested case while the rest applied to both country nested cases. The study focusses on the boundary-crossing learning of sustainable agricultural water relevant for small-scale farming contexts under rain-fed and climate constrained conditions with specific attention to rainwater harvesting and conservation and climate-adaptive seed. The study employed cultural-historical activity theory (CHAT) and developmental work research methodology developed by Yrjö Engeström and his colleagues at the Centre for Researching Activity Development and Learning (CRADLE) at the University of Helsinki in Finland. The study was guided by three objectives. The first objective was to find out how the different groups represented across the activity systems listed above learn together to mediate and communicate sustainable agricultural water and seed saving. To address this objective I conducted focus groups and interviews with key informants, made observations and analysed documents. The second objective was to explore and document the socio-ecological histories of rainwater harvesting and conservation, locally-adaptive seed systems and associated value chains, and socio-cultural histories of agricultural learning systems in the context of small-scale farming using historical and ethnographic research techniques. The third objective was to understand how learning, curriculum innovation and mediation tools for agricultural extension education and farmer training that can expand learning of rainwater harvesting and conservation sustainable practices for improved local agricultural water and climate-adaptive non-formal seed systems in agricultural education and small-scale farmer activity systems could be co-generated. This third objective constituted the boundary-crossing expansive learning that emerged from change laboratory workshops carefully designed to explore the common water for food object across the different but related activity systems. The study reveals historically-persisting tensions and contradictions in the work of agricultural college lecturers, small-scale farmers and extension workers that limit their ability to work together relationally leaving them operating in isolated ‘silos’. The industrially-driven agricultural college curriculum promoting conventional irrigated agriculture conflicted with the college’s objective of producing extension workers who will work with resource-poor small-scale farmers in rain-fed farming systems. This conflict was aggravated by the work of extension workers who had little to no knowledge regarding how to support small-scale farmers facing persistent drought and consequent crop failure due to poor and erratic rainfall. At the same time extension services promoting genetically modified (GMO) seed in South Africa were in conflict with some small-scale farmers’ demands for seed that was adapted to their changing climate and their ability to operate independently with access to and ownership of land. This study shows that the work of agricultural colleges and extension services often defeats its intended structural objectives due to historically-constituted power relations around knowledge. This study has demonstrated the effectiveness of co-generative formative interventions in boundary-crossing scenarios in learning network contexts for expansion of activity in farming communities, agricultural colleges and extension services, with emphasis of transformed activity towards engaging a collective object of rainwater harvesting and conservation for more sustainable agriculture and poverty alleviation. The study shows that diverse combinations of change practice courses, change laboratories, demonstration sites and media engagements as mediation processes in the context of learning networks strengthened the possibility for boundary-crossing expansive learning across activity systems of agricultural college lecturers, smallholder farmers, extension workers and local economic development agency facilitators. Three of the five mediation processes emerged out of the formative intervention processes in both the South African and Zimbabwean case studies while two were not realised in the Zimbabwean case study, namely the change practice course and media engagements, due to different formative intervention conditions, inadequate time and resources. Boundary-crossing was enabled by a variety of actions including understanding and identifying with the context of the other (i.e. developing empathy) as a result of change laboratory workshops that also ensured confrontation with relational contradictions. The study concludes that it is possible for historically-constituted contradictions around water for food to be resolved when participants from different agricultural learning systems co-engage as equals in boundary-crossing change laboratory fora mediated by appropriate tools and processes. The study contributes to innovation in agricultural learning systems in southern Africa, in particular to means of engaging across boundaries of previously largely disconnected activity systems in ways that benefit smallholder farmers who have previously been marginalised from mainstream agricultural learning systems.
- Full Text:
- Date Issued: 2019
- Authors: Pesanayi, Victor Tichaona
- Date: 2019
- Subjects: Agriultural extension work -- Africa, Southern , Agriultural colleges -- Africa, Southern , Farmers -- Education -- Africa, Southern , Agriculture and state -- Africa, Southern , Sustainable agriculture -- Africa, Southern
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/94067 , vital:30997
- Description: This research was conducted in the Amathole rural district of the Eastern Cape Province of South Africa, and in Zvishavane and Zhombe rural districts of the Midlands Province of Zimbabwe over a period of four years. In the first two years of this period I was involved in co-engaged boundary-crossing expansive learning processes with research participants from agricultural education (agricultural college lecturers, principals and university lecturers), extension services (extension officers, advisors and workers), small-scale farmers and a local economic development (LED) agency as agricultural learning activity systems. The latter was applicable only to the South African nested case while the rest applied to both country nested cases. The study focusses on the boundary-crossing learning of sustainable agricultural water relevant for small-scale farming contexts under rain-fed and climate constrained conditions with specific attention to rainwater harvesting and conservation and climate-adaptive seed. The study employed cultural-historical activity theory (CHAT) and developmental work research methodology developed by Yrjö Engeström and his colleagues at the Centre for Researching Activity Development and Learning (CRADLE) at the University of Helsinki in Finland. The study was guided by three objectives. The first objective was to find out how the different groups represented across the activity systems listed above learn together to mediate and communicate sustainable agricultural water and seed saving. To address this objective I conducted focus groups and interviews with key informants, made observations and analysed documents. The second objective was to explore and document the socio-ecological histories of rainwater harvesting and conservation, locally-adaptive seed systems and associated value chains, and socio-cultural histories of agricultural learning systems in the context of small-scale farming using historical and ethnographic research techniques. The third objective was to understand how learning, curriculum innovation and mediation tools for agricultural extension education and farmer training that can expand learning of rainwater harvesting and conservation sustainable practices for improved local agricultural water and climate-adaptive non-formal seed systems in agricultural education and small-scale farmer activity systems could be co-generated. This third objective constituted the boundary-crossing expansive learning that emerged from change laboratory workshops carefully designed to explore the common water for food object across the different but related activity systems. The study reveals historically-persisting tensions and contradictions in the work of agricultural college lecturers, small-scale farmers and extension workers that limit their ability to work together relationally leaving them operating in isolated ‘silos’. The industrially-driven agricultural college curriculum promoting conventional irrigated agriculture conflicted with the college’s objective of producing extension workers who will work with resource-poor small-scale farmers in rain-fed farming systems. This conflict was aggravated by the work of extension workers who had little to no knowledge regarding how to support small-scale farmers facing persistent drought and consequent crop failure due to poor and erratic rainfall. At the same time extension services promoting genetically modified (GMO) seed in South Africa were in conflict with some small-scale farmers’ demands for seed that was adapted to their changing climate and their ability to operate independently with access to and ownership of land. This study shows that the work of agricultural colleges and extension services often defeats its intended structural objectives due to historically-constituted power relations around knowledge. This study has demonstrated the effectiveness of co-generative formative interventions in boundary-crossing scenarios in learning network contexts for expansion of activity in farming communities, agricultural colleges and extension services, with emphasis of transformed activity towards engaging a collective object of rainwater harvesting and conservation for more sustainable agriculture and poverty alleviation. The study shows that diverse combinations of change practice courses, change laboratories, demonstration sites and media engagements as mediation processes in the context of learning networks strengthened the possibility for boundary-crossing expansive learning across activity systems of agricultural college lecturers, smallholder farmers, extension workers and local economic development agency facilitators. Three of the five mediation processes emerged out of the formative intervention processes in both the South African and Zimbabwean case studies while two were not realised in the Zimbabwean case study, namely the change practice course and media engagements, due to different formative intervention conditions, inadequate time and resources. Boundary-crossing was enabled by a variety of actions including understanding and identifying with the context of the other (i.e. developing empathy) as a result of change laboratory workshops that also ensured confrontation with relational contradictions. The study concludes that it is possible for historically-constituted contradictions around water for food to be resolved when participants from different agricultural learning systems co-engage as equals in boundary-crossing change laboratory fora mediated by appropriate tools and processes. The study contributes to innovation in agricultural learning systems in southern Africa, in particular to means of engaging across boundaries of previously largely disconnected activity systems in ways that benefit smallholder farmers who have previously been marginalised from mainstream agricultural learning systems.
- Full Text:
- Date Issued: 2019
Bullying victimisation and traumatic stress severity among high school learners
- Authors: Meyer, Courtney Clarissa
- Date: 2019
- Subjects: Bullying in schools , Bullying Victimisation Developmental psychology Social psychology , Post-traumatic stress disorder
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10948/41864 , vital:36604
- Description: Bullying victimisation is experienced extensively in international and South African schools and results in numerous serious consequences for the victim, traumatic stress being one of these, which has received limited attention in South African literature. This led to the study which had the overall aim to explore and describe the relationship between bullying victimisation and traumatic stress severity among high school learners in the Nelson Mandela Metropole. Seven hundred and thirty-five learners from grades eight through to twelve, from the two selected public high schools were sampled using stratified random sampling. A quantitative research design, which is exploratory, descriptive and correlational was followed. Four self-reported written administered questionnaires, namely a biographical questionnaire, the revised Olweus Bully/Victim questionnaire, the PTSD checklist for DSM-5 (PCL-5) questionnaire and an adapted version of part 1 of the Harvard Trauma questionnaire, were used as data collection measures in this study. The data was analysed and interpreted using descriptive statistics and multiple linear regression analysis. The findings portrayed that 20.95% of the learners from the two selected public high schools in the Nelson Mandela Metropole experienced bullying victimisation. It was also found that just under one third (31.21%) of the high school learners may be suffering from severe traumatic stress. When applying multiple linear regression analysis to the data, being exposed to bullying victimisation specifically in the form of verbal bullying, social exclusion/isolation bullying, emotional/psychological bullying and/or sexual bullying was seen to significantly contribute to the traumatic stress severity reported by the learners. Traumatic stress severity was however seen to depend on the frequency of bullying victimisation.
- Full Text:
- Date Issued: 2019
- Authors: Meyer, Courtney Clarissa
- Date: 2019
- Subjects: Bullying in schools , Bullying Victimisation Developmental psychology Social psychology , Post-traumatic stress disorder
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10948/41864 , vital:36604
- Description: Bullying victimisation is experienced extensively in international and South African schools and results in numerous serious consequences for the victim, traumatic stress being one of these, which has received limited attention in South African literature. This led to the study which had the overall aim to explore and describe the relationship between bullying victimisation and traumatic stress severity among high school learners in the Nelson Mandela Metropole. Seven hundred and thirty-five learners from grades eight through to twelve, from the two selected public high schools were sampled using stratified random sampling. A quantitative research design, which is exploratory, descriptive and correlational was followed. Four self-reported written administered questionnaires, namely a biographical questionnaire, the revised Olweus Bully/Victim questionnaire, the PTSD checklist for DSM-5 (PCL-5) questionnaire and an adapted version of part 1 of the Harvard Trauma questionnaire, were used as data collection measures in this study. The data was analysed and interpreted using descriptive statistics and multiple linear regression analysis. The findings portrayed that 20.95% of the learners from the two selected public high schools in the Nelson Mandela Metropole experienced bullying victimisation. It was also found that just under one third (31.21%) of the high school learners may be suffering from severe traumatic stress. When applying multiple linear regression analysis to the data, being exposed to bullying victimisation specifically in the form of verbal bullying, social exclusion/isolation bullying, emotional/psychological bullying and/or sexual bullying was seen to significantly contribute to the traumatic stress severity reported by the learners. Traumatic stress severity was however seen to depend on the frequency of bullying victimisation.
- Full Text:
- Date Issued: 2019
Bushmeat use is widespread but under-researched in rural communities of South Africa
- Martins, Vusumzi, Shackleton, Charlie M
- Authors: Martins, Vusumzi , Shackleton, Charlie M
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/179745 , vital:43167 , xlink:href="https://doi.org/10.1016/j.gecco.2019.e00583"
- Description: Bushmeat hunting and consumption is common throughout sub-Saharan Africa. Yet, a recent review indicated that the prevalence and nature of bushmeat hunting was little researched or understood in southern African savannas. Here we present information from a number of rural livelihoods studies in South Africa that indicate that bushmeat consumption is common, with typically between 30 and 60% of rural households in the communal tenure regions stating that they consume it. Yet there are only five studies in the country explicitly investigating bushmeat hunting practices, motivations, offtake and target species. A review of the five studies indicates that bushmeat hunting is largely a male activity and that motivations and practices vary between sites. Hunting with dogs is the most common method, targeting multiple small and medium-sized species. With such widespread consumption, it is possible that bushmeat hunting may have significant effects on the population status of some target species and consequently requires urgent and in-depth research of both practices and effects
- Full Text:
- Date Issued: 2019
- Authors: Martins, Vusumzi , Shackleton, Charlie M
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/179745 , vital:43167 , xlink:href="https://doi.org/10.1016/j.gecco.2019.e00583"
- Description: Bushmeat hunting and consumption is common throughout sub-Saharan Africa. Yet, a recent review indicated that the prevalence and nature of bushmeat hunting was little researched or understood in southern African savannas. Here we present information from a number of rural livelihoods studies in South Africa that indicate that bushmeat consumption is common, with typically between 30 and 60% of rural households in the communal tenure regions stating that they consume it. Yet there are only five studies in the country explicitly investigating bushmeat hunting practices, motivations, offtake and target species. A review of the five studies indicates that bushmeat hunting is largely a male activity and that motivations and practices vary between sites. Hunting with dogs is the most common method, targeting multiple small and medium-sized species. With such widespread consumption, it is possible that bushmeat hunting may have significant effects on the population status of some target species and consequently requires urgent and in-depth research of both practices and effects
- Full Text:
- Date Issued: 2019
Busy as a Bee: Breeding Industrious Bees in Malawi
- Kasumba, Arnold M, Pullanikkatil, Deepa
- Authors: Kasumba, Arnold M , Pullanikkatil, Deepa
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/433537 , vital:72982 , ISBN 978-3-319-75580-9 , https://link.springer.com/chapter/10.1007/978-3-319-75580-9_14
- Description: A trial and error venture at beekeeping by Arnold Kasumbu in central Malawi, is now a successful integrated farming enterprise incorporating 160 beehives and producing honey for customers in Malawi and Kenya. It is also a site for educational visits for university students learning about agriculture. Arnold’s parents were tobacco farmers living in the Mitundu area of Lilongwe District in central Malawi. He recalls that his childhood was steeped in poverty as he observed his father put in a lot of effort in his farm with diminutive returns. Being the eldest of three children in the household, Arnold was forced to end his schooling in Standard 8, as his family could not afford the school fees. Resolving that he would not do tobacco farming, he began exploring other means of income generation that would entail fewer struggles. He wanted to become wealthy and take care of his family. Through his integrated farm and beekeeping, he has done exactly that! This is Arnold’s life story.
- Full Text:
- Date Issued: 2019
- Authors: Kasumba, Arnold M , Pullanikkatil, Deepa
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/433537 , vital:72982 , ISBN 978-3-319-75580-9 , https://link.springer.com/chapter/10.1007/978-3-319-75580-9_14
- Description: A trial and error venture at beekeeping by Arnold Kasumbu in central Malawi, is now a successful integrated farming enterprise incorporating 160 beehives and producing honey for customers in Malawi and Kenya. It is also a site for educational visits for university students learning about agriculture. Arnold’s parents were tobacco farmers living in the Mitundu area of Lilongwe District in central Malawi. He recalls that his childhood was steeped in poverty as he observed his father put in a lot of effort in his farm with diminutive returns. Being the eldest of three children in the household, Arnold was forced to end his schooling in Standard 8, as his family could not afford the school fees. Resolving that he would not do tobacco farming, he began exploring other means of income generation that would entail fewer struggles. He wanted to become wealthy and take care of his family. Through his integrated farm and beekeeping, he has done exactly that! This is Arnold’s life story.
- Full Text:
- Date Issued: 2019
Carbon and nutrient storage of the Swartkops Estuary salt marsh and seagrass habitats
- Authors: Els, Jessica
- Date: 2019
- Subjects: Estuarine ecology -- South Africa -- Swartkops River Estuary , Salt marsh ecology -- South Africa -- Swartkops River Estuary Seagrasses -- Ecology Seagrasses -- Conservation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/42196 , vital:36634
- Description: Coastal wetlands play an important role in filtering nutrient contaminants from water bodies and are also effective carbon sinks. These systems are known as blue carbon ecosystems. Blue carbon is defined as the carbon stored and sequestered by coastal vegetated habitats such as seagrasses, salt marsh and mangroves. These habitats are being lost on a global scale due to climate change and other anthropogenic pressures. Quantifying ecosystem services provided by these habitats may lead to better conservation and restoration strategies. Research on this topic has escalated over the past decade but there are no published studies in South Africa. The aim of this study was to quantify the carbon, nitrogen, and phosphorus stocks in the above and below ground tissues of Zostera capensis, Spartina maritima, and Salicornia tegetaria — a seagrass, salt marsh grass, and salt marsh succulent. This was done in both summer and winter to understand the variability of carbon and nutrient storage. The organic carbon stock of the sediment beneath these three species was also quantified. Results showed that S. maritima, S. tegetaria, and Z. capensis stored 16 ± 2.9 Mg C. ha-1, 4.3 ± 0.7 Mg C. ha-1, and 2.1 ± 0.5 Mg C. ha-1 in their respective biomass, and 247 ± 48 Mg C. ha-1, 212 ± 44 Mg C. ha-1, and 224 ± 38 Mg C. ha-1 respectively in the sediment beneath these habitats. This was determined by elemental analysis and the loss on ignition method (LOI). The sediment made up the dominant carbon pool in the estuary and there was very little seasonal variation, however spatial variation was evident. The sediment carbon stocks were similar to the global mean for salt marsh (255 Mg C. ha-1) and greater than the global mean for seagrass (108 Mg C. ha-1). The Swartkops Estuary stored a total (biomass and sediment carbon combined) of 14 094 Mg C in the Z. capensis area of 62 ha, 25 286 Mg C in the S. maritima area of 96 ha, and 5 916 Mg C in the S. tegetaria, covering an area of 27 ha. This is significantly less than what has been found globally in estuaries, but this is largely due to the smaller area cover of these macrophytes. The amount of carbon stored per hectare is much larger in this South African system than in many international studies — possibly due to the high levels of pollution coming into the system. Nitrogen and phosphorus stocks in the plants fluctuated seasonally in relation to the nutrient input to the estuary, with the greatest stocks found in winter in Z. capensis, S. maritima, and S. tegetaria (0.42 ± 0.03 Mg N. ha-1, 1.6 ± 0.13 Mg N. ha-1, and 0.37 ± 0.02 Mg N. ha-1, respectively; and 0.4 ± 0.03 Mg P. ha-1, 1.2 ± 0.10 Mg P. ha-1 in Z. capensis and S. maritima respectively) because nutrient inputs to the system were highest in winter, however the P stocks in S. tegetaria were greatest in summer (0.35 ± 0.04 Mg P. ha-1). The reason for this difference is because of their ability to store phosphorus better than nitrogen and for longer periods of time due to luxury uptake. Salicornia tegetaria N and P stocks were also lower than the other two species, possibly due to its placement along the intertidal gradient, as it is not tidally inundated for as long as the other two species. The Z. capensis and S. maritima at Site 1 showed extremely high amounts of nitrogen in their tissues (105.3 ± 1.6 g kg-1 and 74.91 ± 4.1 g kg-1 respectively). This is due to the area being a depositional site as it was an old oyster farm and experiences little tidal flushing from the sea despite its proximity to the mouth. Nutrient ratios and N: biomass were determined as an indication of nutrient pollution. The N: biomass was low in both seasons in Z. capensis, S. maritima, and S. tegetaria (0.08, 0.02, 0.04 respectively) indicating consistant eutrophic conditions in the estuary. Plant biomass was a better indicator of nutrient pollution than epiphytes which were very low in the Swartkops Estuary and did not prove as a useful indicator of nutrient enrichment. These results can inform local management plans of the ecosystem service potential of these species and how they should be protected for future and current sustainable use as filters for nutrient pollution to keep the water quality in a better state. It also outlines the current state of blue carbon and nutrient stocks in an urban South African estuary.
- Full Text:
- Date Issued: 2019
- Authors: Els, Jessica
- Date: 2019
- Subjects: Estuarine ecology -- South Africa -- Swartkops River Estuary , Salt marsh ecology -- South Africa -- Swartkops River Estuary Seagrasses -- Ecology Seagrasses -- Conservation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/42196 , vital:36634
- Description: Coastal wetlands play an important role in filtering nutrient contaminants from water bodies and are also effective carbon sinks. These systems are known as blue carbon ecosystems. Blue carbon is defined as the carbon stored and sequestered by coastal vegetated habitats such as seagrasses, salt marsh and mangroves. These habitats are being lost on a global scale due to climate change and other anthropogenic pressures. Quantifying ecosystem services provided by these habitats may lead to better conservation and restoration strategies. Research on this topic has escalated over the past decade but there are no published studies in South Africa. The aim of this study was to quantify the carbon, nitrogen, and phosphorus stocks in the above and below ground tissues of Zostera capensis, Spartina maritima, and Salicornia tegetaria — a seagrass, salt marsh grass, and salt marsh succulent. This was done in both summer and winter to understand the variability of carbon and nutrient storage. The organic carbon stock of the sediment beneath these three species was also quantified. Results showed that S. maritima, S. tegetaria, and Z. capensis stored 16 ± 2.9 Mg C. ha-1, 4.3 ± 0.7 Mg C. ha-1, and 2.1 ± 0.5 Mg C. ha-1 in their respective biomass, and 247 ± 48 Mg C. ha-1, 212 ± 44 Mg C. ha-1, and 224 ± 38 Mg C. ha-1 respectively in the sediment beneath these habitats. This was determined by elemental analysis and the loss on ignition method (LOI). The sediment made up the dominant carbon pool in the estuary and there was very little seasonal variation, however spatial variation was evident. The sediment carbon stocks were similar to the global mean for salt marsh (255 Mg C. ha-1) and greater than the global mean for seagrass (108 Mg C. ha-1). The Swartkops Estuary stored a total (biomass and sediment carbon combined) of 14 094 Mg C in the Z. capensis area of 62 ha, 25 286 Mg C in the S. maritima area of 96 ha, and 5 916 Mg C in the S. tegetaria, covering an area of 27 ha. This is significantly less than what has been found globally in estuaries, but this is largely due to the smaller area cover of these macrophytes. The amount of carbon stored per hectare is much larger in this South African system than in many international studies — possibly due to the high levels of pollution coming into the system. Nitrogen and phosphorus stocks in the plants fluctuated seasonally in relation to the nutrient input to the estuary, with the greatest stocks found in winter in Z. capensis, S. maritima, and S. tegetaria (0.42 ± 0.03 Mg N. ha-1, 1.6 ± 0.13 Mg N. ha-1, and 0.37 ± 0.02 Mg N. ha-1, respectively; and 0.4 ± 0.03 Mg P. ha-1, 1.2 ± 0.10 Mg P. ha-1 in Z. capensis and S. maritima respectively) because nutrient inputs to the system were highest in winter, however the P stocks in S. tegetaria were greatest in summer (0.35 ± 0.04 Mg P. ha-1). The reason for this difference is because of their ability to store phosphorus better than nitrogen and for longer periods of time due to luxury uptake. Salicornia tegetaria N and P stocks were also lower than the other two species, possibly due to its placement along the intertidal gradient, as it is not tidally inundated for as long as the other two species. The Z. capensis and S. maritima at Site 1 showed extremely high amounts of nitrogen in their tissues (105.3 ± 1.6 g kg-1 and 74.91 ± 4.1 g kg-1 respectively). This is due to the area being a depositional site as it was an old oyster farm and experiences little tidal flushing from the sea despite its proximity to the mouth. Nutrient ratios and N: biomass were determined as an indication of nutrient pollution. The N: biomass was low in both seasons in Z. capensis, S. maritima, and S. tegetaria (0.08, 0.02, 0.04 respectively) indicating consistant eutrophic conditions in the estuary. Plant biomass was a better indicator of nutrient pollution than epiphytes which were very low in the Swartkops Estuary and did not prove as a useful indicator of nutrient enrichment. These results can inform local management plans of the ecosystem service potential of these species and how they should be protected for future and current sustainable use as filters for nutrient pollution to keep the water quality in a better state. It also outlines the current state of blue carbon and nutrient stocks in an urban South African estuary.
- Full Text:
- Date Issued: 2019
Carbon monoxide exposure and respiratory diseases in Wells Estate and Walmer township in Port Elizabeth, South africa
- Authors: Ejesieme, Amarachi
- Date: 2019
- Subjects: Air -- Pollution -- South Africa -- Port Elizabeth , Carbon monoxide , Respiratory organs -- Diseases , Respiratory infections
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/39874 , vital:35496
- Description: To ascertain household exposure to carbon monoxide (CO) and its associations with respiratory diseases in Port Elizabeth, a cross-sectional study was undertaken in Walmer Township and Wells Estate in Port Elizabeth. Ambient and indoor CO levels were measured in each township and compared with national and international air quality guideline. ChromAir® diffusion carbon monoxide badges were used for carbon monoxide measurement. Badges are relatively inexpensive and easy to use and results can be obtained after a 48-hour passive exposure. Exposure to CO was determined by measuring levels in the ambient environment and living rooms of study dwellings. The prevalence of respiratory diseases and symptoms were assessed using the iBhayi study questionnaire. The mean of ambient and indoor CO levels for the total sample was 8.02 (SD 2.43) and 0.68 (SD 1.23) ppm respectively. In this study, 40% of ambient CO measurements exceeded the World Health Organisation (WHO) 8-hour guideline of 8.7 ppm. The Student’s t-test showed that ambient (p = 0.59) and indoor (p = 0.16) CO levels in Walmer Township and Wells Estate were similar. This shows that CO exposure in both townships do not vary significantly. Fever and chills (32%), headache (19%) and runny/blocked nose (19%) were the most prevalent acute respiratory symptoms. The predominant respiratory diseases/conditions were tuberculosis (8.5%) and asthma (5.7%). CO at levels below the WHO 8-hour guidelines was significantly associated with the prevalence of acute respiratory symptoms (AOR = 2.286; 95% CI: 1.220 - 4.283). Ageing emerged as an independent risk factor for high tuberculosis prevalence in the study sites (AOR = 5.837; 95% CI: 1.654 – 20. 596). The study indicated low levels of carbon monoxide exposure in the study areas. From the findings, CO may be associated with an increase in respiratory symptoms in the study population. Increasing community awareness on sources and adverse health effects of CO exposure with improved service delivery will be helpful in reducing the burden of respiratory outcomes in the study sites.
- Full Text:
- Date Issued: 2019
- Authors: Ejesieme, Amarachi
- Date: 2019
- Subjects: Air -- Pollution -- South Africa -- Port Elizabeth , Carbon monoxide , Respiratory organs -- Diseases , Respiratory infections
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/39874 , vital:35496
- Description: To ascertain household exposure to carbon monoxide (CO) and its associations with respiratory diseases in Port Elizabeth, a cross-sectional study was undertaken in Walmer Township and Wells Estate in Port Elizabeth. Ambient and indoor CO levels were measured in each township and compared with national and international air quality guideline. ChromAir® diffusion carbon monoxide badges were used for carbon monoxide measurement. Badges are relatively inexpensive and easy to use and results can be obtained after a 48-hour passive exposure. Exposure to CO was determined by measuring levels in the ambient environment and living rooms of study dwellings. The prevalence of respiratory diseases and symptoms were assessed using the iBhayi study questionnaire. The mean of ambient and indoor CO levels for the total sample was 8.02 (SD 2.43) and 0.68 (SD 1.23) ppm respectively. In this study, 40% of ambient CO measurements exceeded the World Health Organisation (WHO) 8-hour guideline of 8.7 ppm. The Student’s t-test showed that ambient (p = 0.59) and indoor (p = 0.16) CO levels in Walmer Township and Wells Estate were similar. This shows that CO exposure in both townships do not vary significantly. Fever and chills (32%), headache (19%) and runny/blocked nose (19%) were the most prevalent acute respiratory symptoms. The predominant respiratory diseases/conditions were tuberculosis (8.5%) and asthma (5.7%). CO at levels below the WHO 8-hour guidelines was significantly associated with the prevalence of acute respiratory symptoms (AOR = 2.286; 95% CI: 1.220 - 4.283). Ageing emerged as an independent risk factor for high tuberculosis prevalence in the study sites (AOR = 5.837; 95% CI: 1.654 – 20. 596). The study indicated low levels of carbon monoxide exposure in the study areas. From the findings, CO may be associated with an increase in respiratory symptoms in the study population. Increasing community awareness on sources and adverse health effects of CO exposure with improved service delivery will be helpful in reducing the burden of respiratory outcomes in the study sites.
- Full Text:
- Date Issued: 2019