Molecular phylogeny of Chondrocyclus (Gastropoda: Cyclophoridae), a widespread genus of sedentary, restricted-range snails:
- Cole, Mary L, Raheem, Dinarzarde C, Villet, Martin H
- Authors: Cole, Mary L , Raheem, Dinarzarde C , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140761 , vital:37916 , DOI: 10.1016/j.ympev.2018.09.018
- Description: The genus Chondrocyclus Ancey, 1898 contains the majority of southern African members of the Cyclophoridae, a large family of operculate land snails. We present the first molecular phylogeny of the genus based on two mitochondrial genes (16S and CO1) and complement this with an appraisal of morphological characters relating to the shell and soft parts. Worn shells on which some descriptions and records of different species were based appear to be indistinguishable morphologically, creating taxonomic confusion. We show that Chondrocyclus s.l. underwent two major radiations, one Afromontane and the other largely coastal.
- Full Text:
- Date Issued: 2019
- Authors: Cole, Mary L , Raheem, Dinarzarde C , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140761 , vital:37916 , DOI: 10.1016/j.ympev.2018.09.018
- Description: The genus Chondrocyclus Ancey, 1898 contains the majority of southern African members of the Cyclophoridae, a large family of operculate land snails. We present the first molecular phylogeny of the genus based on two mitochondrial genes (16S and CO1) and complement this with an appraisal of morphological characters relating to the shell and soft parts. Worn shells on which some descriptions and records of different species were based appear to be indistinguishable morphologically, creating taxonomic confusion. We show that Chondrocyclus s.l. underwent two major radiations, one Afromontane and the other largely coastal.
- Full Text:
- Date Issued: 2019
Pigs vs people: the use of pigs as analogues for humans in forensic entomology and taphonomy research
- Matuszewski, Szymon, Hall, Martin J R, Moreau, Gaétan, Schoenly, Kenneth G, Tarone, Aaron M, Villet, Martin H
- Authors: Matuszewski, Szymon , Hall, Martin J R , Moreau, Gaétan , Schoenly, Kenneth G , Tarone, Aaron M , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140557 , vital:37898 , DOI: 10.1007/s00414-019-02074-5
- Description: Most studies of decomposition in forensic entomology and taphonomy have used non-human cadavers. Following the recommendation of using domestic pig cadavers as analogues for humans in forensic entomology in the 1980s, pigs became the most frequently used model cadavers in forensic sciences. They have shaped our understanding of how large vertebrate cadavers decompose in, for example, various environments, seasons and after various ante- or postmortem cadaver modifications. They have also been used to demonstrate the feasibility of several new or well-established forensic techniques. The advent of outdoor human taphonomy facilities enabled experimental comparisons of decomposition between pig and human cadavers. Recent comparisons challenged the pig-as-analogue claim in entomology and taphonomy research. In this review, we discuss in a broad methodological context the advantages and disadvantages of pig and human cadavers for forensic research and rebut the critique of pigs as analogues for humans. We conclude that experiments using human cadaver analogues (i.e. pig carcasses) are easier to replicate and more practical for controlling confounding factors than studies based solely on humans and, therefore, are likely to remain our primary epistemic source of forensic knowledge for the immediate future. We supplement these considerations with new guidelines for model cadaver choice in forensic science research.
- Full Text:
- Date Issued: 2019
- Authors: Matuszewski, Szymon , Hall, Martin J R , Moreau, Gaétan , Schoenly, Kenneth G , Tarone, Aaron M , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140557 , vital:37898 , DOI: 10.1007/s00414-019-02074-5
- Description: Most studies of decomposition in forensic entomology and taphonomy have used non-human cadavers. Following the recommendation of using domestic pig cadavers as analogues for humans in forensic entomology in the 1980s, pigs became the most frequently used model cadavers in forensic sciences. They have shaped our understanding of how large vertebrate cadavers decompose in, for example, various environments, seasons and after various ante- or postmortem cadaver modifications. They have also been used to demonstrate the feasibility of several new or well-established forensic techniques. The advent of outdoor human taphonomy facilities enabled experimental comparisons of decomposition between pig and human cadavers. Recent comparisons challenged the pig-as-analogue claim in entomology and taphonomy research. In this review, we discuss in a broad methodological context the advantages and disadvantages of pig and human cadavers for forensic research and rebut the critique of pigs as analogues for humans. We conclude that experiments using human cadaver analogues (i.e. pig carcasses) are easier to replicate and more practical for controlling confounding factors than studies based solely on humans and, therefore, are likely to remain our primary epistemic source of forensic knowledge for the immediate future. We supplement these considerations with new guidelines for model cadaver choice in forensic science research.
- Full Text:
- Date Issued: 2019
Effect of the killing method on post-mortem change in length of larvae of Thanatophilus micans (Fabricius, 1794) (Coleoptera: Silphidae) stored in 70% ethanol
- Midgley, John M, Villet, Martin H
- Authors: Midgley, John M , Villet, Martin H
- Date: 2009
- Language: English
- Type: text , Article
- Identifier: vital:6857 , http://hdl.handle.net/10962/d1011140
- Description: It is recommended that insect larvae collected for forensic purposes should be killed using the same method as was used to create existing models for rate of development. Certain killing methods have been shown to be preferable because they cause less distortion of the specimens, but these are not always practicable in a particular case, and so a method of correcting for effect of killing method is required. Larvae of all instars of Thanatophilus micans (Fabricius 1794) (Coleoptera: Silphidae) were measured and then killed by immersion in ethanol, immersion in hot water or freezing. Samples were re-measured immediately after death, then stored in excess 70% ethanol and re-measured after 1 week and again after 4 weeks. The change in length was significantly different from zero in all samples (t = -9.07022, p < 0.001). An analysis of covariance showed that instar, killing method and storage time all had a significant effect on the change in length. The results showed that T. micans larvae have a great potential for change in length during storage but that the change is not predictable, as the magnitude and sign of the change are variable.
- Full Text:
- Date Issued: 2009
- Authors: Midgley, John M , Villet, Martin H
- Date: 2009
- Language: English
- Type: text , Article
- Identifier: vital:6857 , http://hdl.handle.net/10962/d1011140
- Description: It is recommended that insect larvae collected for forensic purposes should be killed using the same method as was used to create existing models for rate of development. Certain killing methods have been shown to be preferable because they cause less distortion of the specimens, but these are not always practicable in a particular case, and so a method of correcting for effect of killing method is required. Larvae of all instars of Thanatophilus micans (Fabricius 1794) (Coleoptera: Silphidae) were measured and then killed by immersion in ethanol, immersion in hot water or freezing. Samples were re-measured immediately after death, then stored in excess 70% ethanol and re-measured after 1 week and again after 4 weeks. The change in length was significantly different from zero in all samples (t = -9.07022, p < 0.001). An analysis of covariance showed that instar, killing method and storage time all had a significant effect on the change in length. The results showed that T. micans larvae have a great potential for change in length during storage but that the change is not predictable, as the magnitude and sign of the change are variable.
- Full Text:
- Date Issued: 2009
A fuzzy classification technique for predicting species' distributions: applications using invasive alien plants and indigenous insects
- Robertson, Mark P, Villet, Martin H, Palmer, Anthony R
- Authors: Robertson, Mark P , Villet, Martin H , Palmer, Anthony R
- Date: 2004
- Language: English
- Type: text , Article
- Identifier: vital:6897 , http://hdl.handle.net/10962/d1011659 , http://dx.doi.org/10.1111/j.1366-9516.2004.00108.x
- Description: A new predictive modelling technique called the fuzzy envelope model (FEM) is introduced. The technique can be used to predict potential distributions of organisms using presence-only locality records and a set of environmental predictor variables. FEM uses fuzzy logic to classify a set of predictor variable maps based on the values associated with presence records and combines the results to produce a potential distribution map for a target species. This technique represents several refinements of the envelope approach used in the BIOCLIM modelling package. These refinements are related to the way in which FEMs deal with uncertainty, the way in which this uncertainty is represented in the resultant potential distribution maps, and the way that these maps can be interpreted and applied. To illustrate its potential use in biogeographical studies, FEM was applied to predicting the potential distribution of three invasive alien plant species (Lantana camara L., Ricinus communis L. and Solanum mauritianum Scop.), and three native cicada species (Capicada decora Germar, Platypleura deusta Thun. and P. capensis L.) in South Africa, Lesotho and Swaziland. These models were quantitatively compared with models produced by means of the algorithm used in the BIOCLIM modelling package, which is referred to as a crisp envelope model (the CEM design). The average performance of models of the FEM design was consistently higher than those of the CEM design. There were significant differences in model performance among species but there was no significant interaction between model design and species. The average maximum kappa value ranged from 0.70 to 0.90 for FEM design and from 0.57 to 0.89 for the CEM design, which can be described as 'good' to 'excellent' using published ranges of agreement for the kappa statistic. This technique can be used to predict species' potential distributions that could be used for identifying regions at risk from invasion by alien species. These predictions could also be used in conservation planning in the case of native species.
- Full Text:
- Date Issued: 2004
- Authors: Robertson, Mark P , Villet, Martin H , Palmer, Anthony R
- Date: 2004
- Language: English
- Type: text , Article
- Identifier: vital:6897 , http://hdl.handle.net/10962/d1011659 , http://dx.doi.org/10.1111/j.1366-9516.2004.00108.x
- Description: A new predictive modelling technique called the fuzzy envelope model (FEM) is introduced. The technique can be used to predict potential distributions of organisms using presence-only locality records and a set of environmental predictor variables. FEM uses fuzzy logic to classify a set of predictor variable maps based on the values associated with presence records and combines the results to produce a potential distribution map for a target species. This technique represents several refinements of the envelope approach used in the BIOCLIM modelling package. These refinements are related to the way in which FEMs deal with uncertainty, the way in which this uncertainty is represented in the resultant potential distribution maps, and the way that these maps can be interpreted and applied. To illustrate its potential use in biogeographical studies, FEM was applied to predicting the potential distribution of three invasive alien plant species (Lantana camara L., Ricinus communis L. and Solanum mauritianum Scop.), and three native cicada species (Capicada decora Germar, Platypleura deusta Thun. and P. capensis L.) in South Africa, Lesotho and Swaziland. These models were quantitatively compared with models produced by means of the algorithm used in the BIOCLIM modelling package, which is referred to as a crisp envelope model (the CEM design). The average performance of models of the FEM design was consistently higher than those of the CEM design. There were significant differences in model performance among species but there was no significant interaction between model design and species. The average maximum kappa value ranged from 0.70 to 0.90 for FEM design and from 0.57 to 0.89 for the CEM design, which can be described as 'good' to 'excellent' using published ranges of agreement for the kappa statistic. This technique can be used to predict species' potential distributions that could be used for identifying regions at risk from invasion by alien species. These predictions could also be used in conservation planning in the case of native species.
- Full Text:
- Date Issued: 2004
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