Biogeographical comparison of the emergent macrophyte, Sagittaria platyphylla in its native and introduced ranges
- Kwong, Raelene M, Sagliocco, Jean Louis, Harms, Nathan E, Butler, Kym L, Green, Peter T, Martin, Grant D
- Authors: Kwong, Raelene M , Sagliocco, Jean Louis , Harms, Nathan E , Butler, Kym L , Green, Peter T , Martin, Grant D
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76980 , vital:30652 , https://doi.org/10.1016/j.aquabot.2017.05.001
- Description: Understanding why some plant species become invasive is important to predict and prevent future weed threats and identify appropriate management strategies. Many hypotheses have been proposed to explain why plants become invasive, yet few studies have quantitatively compared plant and population parameters between native and introduced range populations to gain an objective perspective on the causes of plant invasion. The present study uses a biogeographical field survey to compare morphological and reproductive traits and abundance between the native range (USA) and two introduced ranges (Australia and South Africa) of Sagittaria platyphylla (Engelm.) J.G. Sm (Alismataceae), a highly invasive freshwater macrophyte. Introduced and native populations differed in sexual reproductive output with the number of achenes per fruiting head and individual achene weight found to be 40% and 50% greater in introduced populations respectively. However, no other morphological traits were found to be consistently different between the native and both introduced ranges, especially after taking into account differences in environmental conditions between the three ranges. Although populations in introduced regions were larger and occupied greater percentage cover, no differences in plant density were evident. Our results suggest that, apart from sexual reproduction, many of the trait patterns observed in S. platyphylla are influenced by environmental and habitat conditions within the native and invaded ranges. We conclude that the enemy release hypothesis best explains the results observed for sexual reproduction. In particular, we hypothesise that a release from natural enemies, specifically a pre-dispersal seed predator, may induce reproductive plasticity in S. platyphylla.
- Full Text:
- Date Issued: 2017
- Authors: Kwong, Raelene M , Sagliocco, Jean Louis , Harms, Nathan E , Butler, Kym L , Green, Peter T , Martin, Grant D
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76980 , vital:30652 , https://doi.org/10.1016/j.aquabot.2017.05.001
- Description: Understanding why some plant species become invasive is important to predict and prevent future weed threats and identify appropriate management strategies. Many hypotheses have been proposed to explain why plants become invasive, yet few studies have quantitatively compared plant and population parameters between native and introduced range populations to gain an objective perspective on the causes of plant invasion. The present study uses a biogeographical field survey to compare morphological and reproductive traits and abundance between the native range (USA) and two introduced ranges (Australia and South Africa) of Sagittaria platyphylla (Engelm.) J.G. Sm (Alismataceae), a highly invasive freshwater macrophyte. Introduced and native populations differed in sexual reproductive output with the number of achenes per fruiting head and individual achene weight found to be 40% and 50% greater in introduced populations respectively. However, no other morphological traits were found to be consistently different between the native and both introduced ranges, especially after taking into account differences in environmental conditions between the three ranges. Although populations in introduced regions were larger and occupied greater percentage cover, no differences in plant density were evident. Our results suggest that, apart from sexual reproduction, many of the trait patterns observed in S. platyphylla are influenced by environmental and habitat conditions within the native and invaded ranges. We conclude that the enemy release hypothesis best explains the results observed for sexual reproduction. In particular, we hypothesise that a release from natural enemies, specifically a pre-dispersal seed predator, may induce reproductive plasticity in S. platyphylla.
- Full Text:
- Date Issued: 2017
Extended use of grey water for irrigating home gardens in an arid environment
- Al-Ismaili, Abdulrahim M, Ahmed, Mushtaque, Al-Busaidi, Ahmed, Al-Adawi, Seif, Tandlich, Roman, Al-Amri, Mohammed
- Authors: Al-Ismaili, Abdulrahim M , Ahmed, Mushtaque , Al-Busaidi, Ahmed , Al-Adawi, Seif , Tandlich, Roman , Al-Amri, Mohammed
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76048 , vital:30497 , https://doi.org/10.1007/s11356-017-8963-z
- Description: The use of treated grey water (GW) for home gardens, peri-urban agriculture and landscaping is becoming popular in many water stressed countries such as Oman. This study aims to investigate the treatment efficacy, health and chemical concerns, cost-benefits and maintenance protocol of a GW treatment system as well as the effect of irrigation with GW on crop yield. Therefore, a decentralized homemade GW treatment system was installed in a newly constructed house in Muscat, Oman and studied over a 2-year period. The treated GW was found to be suitable for irrigation as per Omani standards. GW when mixed with kitchen effluent substituted the use of nutrient supplements for plants and did not show any harmful chemical or biological contamination. The capital cost of the system was around US $980, and the annual operating cost was US $78 with annual income and savings from the system being around US $572 indicating a payback period of nearly 2 years. It was found that the system required simple but regular maintenance particularly cleaning of the top layer of the filter. It can be concluded from this study that such a GW system should be technically, economically and environmentally feasible in Oman. Also, wider acceptance by the general public to the idea of GW reuse will help in mitigating the water shortage problem of the country to some extent.
- Full Text:
- Date Issued: 2017
- Authors: Al-Ismaili, Abdulrahim M , Ahmed, Mushtaque , Al-Busaidi, Ahmed , Al-Adawi, Seif , Tandlich, Roman , Al-Amri, Mohammed
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76048 , vital:30497 , https://doi.org/10.1007/s11356-017-8963-z
- Description: The use of treated grey water (GW) for home gardens, peri-urban agriculture and landscaping is becoming popular in many water stressed countries such as Oman. This study aims to investigate the treatment efficacy, health and chemical concerns, cost-benefits and maintenance protocol of a GW treatment system as well as the effect of irrigation with GW on crop yield. Therefore, a decentralized homemade GW treatment system was installed in a newly constructed house in Muscat, Oman and studied over a 2-year period. The treated GW was found to be suitable for irrigation as per Omani standards. GW when mixed with kitchen effluent substituted the use of nutrient supplements for plants and did not show any harmful chemical or biological contamination. The capital cost of the system was around US $980, and the annual operating cost was US $78 with annual income and savings from the system being around US $572 indicating a payback period of nearly 2 years. It was found that the system required simple but regular maintenance particularly cleaning of the top layer of the filter. It can be concluded from this study that such a GW system should be technically, economically and environmentally feasible in Oman. Also, wider acceptance by the general public to the idea of GW reuse will help in mitigating the water shortage problem of the country to some extent.
- Full Text:
- Date Issued: 2017
Integrating Climate Change Adaptation (CCA) and Disaster Risk Reduction (DRR) for greater local level resilience: lessons from a multi-stakeholder think-tank
- Pereira, Taryn, Shackleton, Sheona E, Donkor, Felix Kwabena
- Authors: Pereira, Taryn , Shackleton, Sheona E , Donkor, Felix Kwabena
- Date: 2017
- Subjects: Climatic changes -- South Africa , Climatic changes -- South Africa -- Eastern Cape -- South Africa
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10962/62027 , vital:28097
- Description: The last few years have seen one of the most severe droughts in recent times in the southern African region, and news headlines are increasingly full of warnings about heavy storms, fires and floods. There is no doubt that extreme hydro-meteorological events, and their multiple and potentially disastrous impacts, are at the forefront of the public consciousness at the present time and are one of the key concerns regarding the impacts of climate change in the region. While the links between extreme climate events, disaster risk reduction (DRR - see Box 1) and climate change adaptation (CCA - see Box 2) are recognised in the South African Climate Change White Paper, this is not the case for the whole region. Furthermore, even if there is national recognition of the need to synergise these two spheres of endeavour, this does not always trickle down to effective policy, planning and implementation at the local level.
- Full Text:
- Date Issued: 2017
- Authors: Pereira, Taryn , Shackleton, Sheona E , Donkor, Felix Kwabena
- Date: 2017
- Subjects: Climatic changes -- South Africa , Climatic changes -- South Africa -- Eastern Cape -- South Africa
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10962/62027 , vital:28097
- Description: The last few years have seen one of the most severe droughts in recent times in the southern African region, and news headlines are increasingly full of warnings about heavy storms, fires and floods. There is no doubt that extreme hydro-meteorological events, and their multiple and potentially disastrous impacts, are at the forefront of the public consciousness at the present time and are one of the key concerns regarding the impacts of climate change in the region. While the links between extreme climate events, disaster risk reduction (DRR - see Box 1) and climate change adaptation (CCA - see Box 2) are recognised in the South African Climate Change White Paper, this is not the case for the whole region. Furthermore, even if there is national recognition of the need to synergise these two spheres of endeavour, this does not always trickle down to effective policy, planning and implementation at the local level.
- Full Text:
- Date Issued: 2017
Investigating the effects various compilers have on the electromagnetic signature of a cryptographic executable
- Frieslaar, Ibraheem, Irwin, Barry V W
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430207 , vital:72673 , https://doi.org/10.1145/3129416.3129436
- Description: This research investigates changes in the electromagnetic (EM) signatures of a cryptographic binary executable based on compile-time parameters to the GNU and clang compilers. The source code was compiled and executed on a Raspberry Pi 2, which utilizes the ARMv7 CPU. Various optimization flags are enabled at compile-time and the output of the binary executable's EM signatures are captured at run-time. It is demonstrated that GNU and clang compilers produced different EM signature on program execution. The results indicated while utilizing the O3 optimization flag, the EM signature of the program changes. Additionally, the g++ compiler demonstrated fewer instructions were required to run the executable; this related to fewer EM emissions leaked. The EM data from the various compilers under different optimization levels was used as input data for a correlation power analysis attack. The results indicated that partial AES-128 encryption keys was possible. In addition, the fewest subkeys recovered was when the clang compiler was used with level O2 optimization. Finally, the research was able to recover 15 of 16 AES-128 cryptographic algorithm's subkeys, from the the Pi.
- Full Text:
- Date Issued: 2017
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430207 , vital:72673 , https://doi.org/10.1145/3129416.3129436
- Description: This research investigates changes in the electromagnetic (EM) signatures of a cryptographic binary executable based on compile-time parameters to the GNU and clang compilers. The source code was compiled and executed on a Raspberry Pi 2, which utilizes the ARMv7 CPU. Various optimization flags are enabled at compile-time and the output of the binary executable's EM signatures are captured at run-time. It is demonstrated that GNU and clang compilers produced different EM signature on program execution. The results indicated while utilizing the O3 optimization flag, the EM signature of the program changes. Additionally, the g++ compiler demonstrated fewer instructions were required to run the executable; this related to fewer EM emissions leaked. The EM data from the various compilers under different optimization levels was used as input data for a correlation power analysis attack. The results indicated that partial AES-128 encryption keys was possible. In addition, the fewest subkeys recovered was when the clang compiler was used with level O2 optimization. Finally, the research was able to recover 15 of 16 AES-128 cryptographic algorithm's subkeys, from the the Pi.
- Full Text:
- Date Issued: 2017
Issues-Based Enquiry: An Enabling Pedagogy for ESD in Teacher Education and School Geography
- Authors: Wilmot, Diana P
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/436266 , vital:73253 , ISBN 978-3-319-45989-9 , https://doi.org/10.1007/978-3-319-45989-9_10
- Description: This chapter addresses the need for innovations in geography teacher education programmes in a developing world context. More specifically, it responds to the need for practical ‘how to’ examples for ESD integration into school geography by de-scribing a pedagogical experiment that was piloted with in-service Namibian teachers and education development offic-ers (EDOs) enrolled for a Bachelor of Education (Honours) de-gree in 2014. The theoretical constructs underpinning the ex-periment’s design and pedagogical approach as well as the teacher professional development model are described. This is followed by a description and justification of the methodology used to answer the research question: ‘How can issues-based enquiry enable the integration of ESD at the micro level of the classroom?’ The findings of the experiment provide evidence of how issues-based enquiry, underpinned by active learning and constructivist epistemology and a model of teacher pro-fessional development located in reflexive practice, enabled the teachers to acquire foundational knowledge and pedagog-ical content knowledge for effective integration of ESD into school geography. This chapter may offer other teacher educators some guidelines on how to develop teacher capacity to integrate ESD into their own programmes.
- Full Text:
- Date Issued: 2017
- Authors: Wilmot, Diana P
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/436266 , vital:73253 , ISBN 978-3-319-45989-9 , https://doi.org/10.1007/978-3-319-45989-9_10
- Description: This chapter addresses the need for innovations in geography teacher education programmes in a developing world context. More specifically, it responds to the need for practical ‘how to’ examples for ESD integration into school geography by de-scribing a pedagogical experiment that was piloted with in-service Namibian teachers and education development offic-ers (EDOs) enrolled for a Bachelor of Education (Honours) de-gree in 2014. The theoretical constructs underpinning the ex-periment’s design and pedagogical approach as well as the teacher professional development model are described. This is followed by a description and justification of the methodology used to answer the research question: ‘How can issues-based enquiry enable the integration of ESD at the micro level of the classroom?’ The findings of the experiment provide evidence of how issues-based enquiry, underpinned by active learning and constructivist epistemology and a model of teacher pro-fessional development located in reflexive practice, enabled the teachers to acquire foundational knowledge and pedagog-ical content knowledge for effective integration of ESD into school geography. This chapter may offer other teacher educators some guidelines on how to develop teacher capacity to integrate ESD into their own programmes.
- Full Text:
- Date Issued: 2017
Life-histories explain the conservation status of two estuary-associated pipefishes
- Whitfield, Alan K, Mkare, Thomas K, Teske, Peter R, James, Nicola C, Cowley, Paul D
- Authors: Whitfield, Alan K , Mkare, Thomas K , Teske, Peter R , James, Nicola C , Cowley, Paul D
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445087 , vital:74346 , https://doi.org/10.1016/j.biocon.2017.06.024
- Description: Two endemic southern African pipefish species (Teleostei: Syngnathidae) co-occur in estuaries on the southeast coast of South Africa. The larger longsnout pipefish, Syngnathus temminckii, is abundant and has a wide range that comprises coastal and estuarine habitats in all three of the region's marine biogeographic provinces. In contrast, the smaller estuarine pipefish S. watermeyeri is critically endangered, and confined to a few warm-temperate estuaries. Here, we explore reasons for these considerable differences in conservation status.
- Full Text:
- Date Issued: 2017
- Authors: Whitfield, Alan K , Mkare, Thomas K , Teske, Peter R , James, Nicola C , Cowley, Paul D
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445087 , vital:74346 , https://doi.org/10.1016/j.biocon.2017.06.024
- Description: Two endemic southern African pipefish species (Teleostei: Syngnathidae) co-occur in estuaries on the southeast coast of South Africa. The larger longsnout pipefish, Syngnathus temminckii, is abundant and has a wide range that comprises coastal and estuarine habitats in all three of the region's marine biogeographic provinces. In contrast, the smaller estuarine pipefish S. watermeyeri is critically endangered, and confined to a few warm-temperate estuaries. Here, we explore reasons for these considerable differences in conservation status.
- Full Text:
- Date Issued: 2017
Structural and optical properties of sol-gel derived α-Fe2O3 nanoparticles
- Mathevula, Langutani E, Noto, L L, Mothudi, Bakang M, Chithambo, Makaiko L, Dhlamini, M S
- Authors: Mathevula, Langutani E , Noto, L L , Mothudi, Bakang M , Chithambo, Makaiko L , Dhlamini, M S
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/115467 , vital:34145 , DOI: 10.1016/j.jlumin.2017.07.055
- Description: α-Fe2O3 nanoparticles of crystallite size between 3.9 and 9.5 nm were synthesized by a simple sol-gel method using iron (III) nitrate nonahydrate (Fe(NO3)3·9H2O) as a precursor. Polyvinyl alcohol (PVA) was added as a capping agent to avoid agglomeration of the nanoparticles. A single pure phase was obtained when the sample was annealed at 300 °C and 600 °C. The purity was further confirmed with the Fourier Transform Infrared Spectroscopy. The energy band gap of the materials was extrapolated from the Kubelka-Munk relation and it ranges between 1.8 and 2.3 eV. The Photoluminescence of the 3 samples shows a broad emission spectrum centered at about 422 nm when excited by a 336 nm lamp. The emission peaks intensities increased with an increase in the annealing temperature, accept for the 576 nm peak, which was quenched as the temperature increased from 300 °C to 600 °C. The thermoluminescence glow curves were carried out at different heating rates and the samples were exposed to different beta particle doses (82–1315 Gy). The activation energy of the trapped electrons was determined.
- Full Text: false
- Date Issued: 2017
- Authors: Mathevula, Langutani E , Noto, L L , Mothudi, Bakang M , Chithambo, Makaiko L , Dhlamini, M S
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/115467 , vital:34145 , DOI: 10.1016/j.jlumin.2017.07.055
- Description: α-Fe2O3 nanoparticles of crystallite size between 3.9 and 9.5 nm were synthesized by a simple sol-gel method using iron (III) nitrate nonahydrate (Fe(NO3)3·9H2O) as a precursor. Polyvinyl alcohol (PVA) was added as a capping agent to avoid agglomeration of the nanoparticles. A single pure phase was obtained when the sample was annealed at 300 °C and 600 °C. The purity was further confirmed with the Fourier Transform Infrared Spectroscopy. The energy band gap of the materials was extrapolated from the Kubelka-Munk relation and it ranges between 1.8 and 2.3 eV. The Photoluminescence of the 3 samples shows a broad emission spectrum centered at about 422 nm when excited by a 336 nm lamp. The emission peaks intensities increased with an increase in the annealing temperature, accept for the 576 nm peak, which was quenched as the temperature increased from 300 °C to 600 °C. The thermoluminescence glow curves were carried out at different heating rates and the samples were exposed to different beta particle doses (82–1315 Gy). The activation energy of the trapped electrons was determined.
- Full Text: false
- Date Issued: 2017
The effect of the Xpert MTB/RIF test on the time to MDR-TB treatment initiation in a rural setting: a cohort study in South Africa’s Eastern Cape Province
- Iruedo, Joshua, O’Mahony , Don, Mabunda, Sikhumbuzo A, Wright, Graham, Cawe , Busisiwe
- Authors: Iruedo, Joshua , O’Mahony , Don , Mabunda, Sikhumbuzo A , Wright, Graham , Cawe , Busisiwe
- Date: 2017
- Subjects: South Africa Multidrug-resistant tuberculosis Computer File
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/6098 , vital:45115 , https://DOI10.1186/s12879-017-2200-8
- Description: Background: There are significant delays in initiation of multidrug-resistant tuberculosis (MDR –TB) treatment. The Xpert MTB/RIF test has been shown to reduce the time to diagnosis and treatment of MDR-TB predominantly in urban centres. This study describes the time to treatment of MDR-TB and the effect of Xpert MTB/RIF on time to treatment in a deprived rural area in South Africa. Methods: This was a retrospective cohort study analysing the medical records of patients diagnosed with MDR-TB in King Sabata Dalindyebo Sub-District between 2009 and 2014. Numerical data were reported using the Kruskal-Wallis and Wilcoxon sum rank tests and categorical data compared using the two-sample test of proportions. Results: Of the 342 patients with MDR-TB identified, 285 were eligible for analysis, of whom 145 (61.4%) were HIV positive. The median time from sputum collection to MDR-TB diagnosis was 27 days (IQR: 2–45) and differed significantly between diagnostic modalities: Xpert MTB/RIF, 1 day (IQR: 1–4; n = 114: p less 0.0001); Line Probe Assay 12 days (IQR: 8–21; n = 28; p less 0.0001); and culture/phenotypic drug sensitivity testing 45 days (IQR: 39–59; n = 143: p less 0.0001). The time from diagnosis to treatment initiation was 14 days (IQR: 8–27) and did not differ significantly between diagnostic modality. The median time from sputum collection to treatment initiation was 49 days (IQR: 20–69) but differed significantly between diagnostic modalities: Xpert MTB/RIF, 18 days (IQR: 11–27; n = 114; p less 0.0001); Line Probe Assay 29 days (IQR: 14.5–53; n = 28; p les 0.0001); and culture/phenotypic drug sensitivity, 64 days (IQR: 50–103; n = 143: P less 0.0001). Age, sex and HIV status did not influence the time intervals. Conclusions: Xpert MTB/RIF significantly reduced the time to MDR-TB treatment in a deprived rural setting as a result of a reduced time to diagnosis. However, the national target of five days was not achieved. Further research is needed to explore and address programmatic and patient-related challenges contributing to delayed treatment initiation. Keywords: Xpert MTB/RIF, MDR-TB, Rural, Time-to-treatment, Cohort study
- Full Text:
- Date Issued: 2017
- Authors: Iruedo, Joshua , O’Mahony , Don , Mabunda, Sikhumbuzo A , Wright, Graham , Cawe , Busisiwe
- Date: 2017
- Subjects: South Africa Multidrug-resistant tuberculosis Computer File
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/6098 , vital:45115 , https://DOI10.1186/s12879-017-2200-8
- Description: Background: There are significant delays in initiation of multidrug-resistant tuberculosis (MDR –TB) treatment. The Xpert MTB/RIF test has been shown to reduce the time to diagnosis and treatment of MDR-TB predominantly in urban centres. This study describes the time to treatment of MDR-TB and the effect of Xpert MTB/RIF on time to treatment in a deprived rural area in South Africa. Methods: This was a retrospective cohort study analysing the medical records of patients diagnosed with MDR-TB in King Sabata Dalindyebo Sub-District between 2009 and 2014. Numerical data were reported using the Kruskal-Wallis and Wilcoxon sum rank tests and categorical data compared using the two-sample test of proportions. Results: Of the 342 patients with MDR-TB identified, 285 were eligible for analysis, of whom 145 (61.4%) were HIV positive. The median time from sputum collection to MDR-TB diagnosis was 27 days (IQR: 2–45) and differed significantly between diagnostic modalities: Xpert MTB/RIF, 1 day (IQR: 1–4; n = 114: p less 0.0001); Line Probe Assay 12 days (IQR: 8–21; n = 28; p less 0.0001); and culture/phenotypic drug sensitivity testing 45 days (IQR: 39–59; n = 143: p less 0.0001). The time from diagnosis to treatment initiation was 14 days (IQR: 8–27) and did not differ significantly between diagnostic modality. The median time from sputum collection to treatment initiation was 49 days (IQR: 20–69) but differed significantly between diagnostic modalities: Xpert MTB/RIF, 18 days (IQR: 11–27; n = 114; p less 0.0001); Line Probe Assay 29 days (IQR: 14.5–53; n = 28; p les 0.0001); and culture/phenotypic drug sensitivity, 64 days (IQR: 50–103; n = 143: P less 0.0001). Age, sex and HIV status did not influence the time intervals. Conclusions: Xpert MTB/RIF significantly reduced the time to MDR-TB treatment in a deprived rural setting as a result of a reduced time to diagnosis. However, the national target of five days was not achieved. Further research is needed to explore and address programmatic and patient-related challenges contributing to delayed treatment initiation. Keywords: Xpert MTB/RIF, MDR-TB, Rural, Time-to-treatment, Cohort study
- Full Text:
- Date Issued: 2017
The FOXP2 forkhead domain binds to a variety of DNA sequences with different rates and affinities
- Webb, Helen, Steeb, Olga, Blane, Ashleigh, Rotherham, Lia, Aron, Shaun, Machanick, Philip, Dirr, Heinrich W, Fanucchi, Sylvia
- Authors: Webb, Helen , Steeb, Olga , Blane, Ashleigh , Rotherham, Lia , Aron, Shaun , Machanick, Philip , Dirr, Heinrich W , Fanucchi, Sylvia
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439326 , vital:73567 , https://doi.org/10.1093/jb/mvx003
- Description: FOXP2 is a member of the P subfamily of FOX transcription factors, the DNA-binding domain of which is the winged helix forkhead domain (FHD). In this work we show that the FOXP2 FHD is able to bind to various DNA sequences, including a novel sequence identified in this work, with different affinities and rates as detected using surface plasmon resonance. Combining the experimental work with molecular docking, we show that high-affinity sequences remain bound to the protein for longer, form a greater number of interactions with the protein and induce a greater structural change in the protein than low-affinity sequences. We propose a binding model for the FOXP2 FHD that involves three types of binding sequence: low affinity sites which allow for rapid scanning of the genome by the protein in a partially unstructured state; moderate affinity sites which serve to locate the protein near target sites and high-affinity sites which secure the protein to the DNA and induce a conformational change necessary for functional binding and the possible initiation of downstream transcriptional events.
- Full Text:
- Date Issued: 2017
- Authors: Webb, Helen , Steeb, Olga , Blane, Ashleigh , Rotherham, Lia , Aron, Shaun , Machanick, Philip , Dirr, Heinrich W , Fanucchi, Sylvia
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439326 , vital:73567 , https://doi.org/10.1093/jb/mvx003
- Description: FOXP2 is a member of the P subfamily of FOX transcription factors, the DNA-binding domain of which is the winged helix forkhead domain (FHD). In this work we show that the FOXP2 FHD is able to bind to various DNA sequences, including a novel sequence identified in this work, with different affinities and rates as detected using surface plasmon resonance. Combining the experimental work with molecular docking, we show that high-affinity sequences remain bound to the protein for longer, form a greater number of interactions with the protein and induce a greater structural change in the protein than low-affinity sequences. We propose a binding model for the FOXP2 FHD that involves three types of binding sequence: low affinity sites which allow for rapid scanning of the genome by the protein in a partially unstructured state; moderate affinity sites which serve to locate the protein near target sites and high-affinity sites which secure the protein to the DNA and induce a conformational change necessary for functional binding and the possible initiation of downstream transcriptional events.
- Full Text:
- Date Issued: 2017
The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype:
- Cornick, Jennifer E, Tastan Bishop, Özlem, Yalcin, Feyruz, Kiran, Anmol M, Kumwenda, Benjamin, Chaguza, Chrispin, Govindpershad, Shanil, Ousmane, Sani, Senghore, Madikay, du Plessis, Mignon, Pluschke, Gerd, 1952-, Ebruke, Chinelo, McGee, Lesley, Sigaùque , Beutel, Collard, Jean-Marc, Bentley, Stephen D, Kadioglu , Aras, Antonio, Martin, von Gottberg, Anne, French, Neil, Klugman, Keith P, Heyderman, Robert S, Alderson, Mark, Everett, Dean B
- Authors: Cornick, Jennifer E , Tastan Bishop, Özlem , Yalcin, Feyruz , Kiran, Anmol M , Kumwenda, Benjamin , Chaguza, Chrispin , Govindpershad, Shanil , Ousmane, Sani , Senghore, Madikay , du Plessis, Mignon , Pluschke, Gerd, 1952- , Ebruke, Chinelo , McGee, Lesley , Sigaùque , Beutel , Collard, Jean-Marc , Bentley, Stephen D , Kadioglu , Aras , Antonio, Martin , von Gottberg, Anne , French, Neil , Klugman, Keith P , Heyderman, Robert S , Alderson, Mark , Everett, Dean B
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148318 , vital:38729 , DOI: 10.1016/j.vaccine.2016.12.037
- Description: Serotype 1 is one of the most common causes of pneumococcal disease worldwide. Pneumococcal protein vaccines are currently being developed as an alternate intervention strategy to pneumococcal conjugate vaccines. Pre-requisites for an efficacious pneumococcal protein vaccine are universal presence and minimal variation of the target antigen in the pneumococcal population, and the capability to induce a robust human immune response. We used in silico analysis to assess the prevalence of seven protein vaccine candidates (CbpA, PcpA, PhtD, PspA, SP0148, SP1912, SP2108) among 445 serotype 1 pneumococci from 26 different countries, across four continents. CbpA (76%), PspA (68%), PhtD (28%), PcpA (11%) were not universally encoded in the study population, and would not provide full coverage against serotype 1.
- Full Text:
- Date Issued: 2017
- Authors: Cornick, Jennifer E , Tastan Bishop, Özlem , Yalcin, Feyruz , Kiran, Anmol M , Kumwenda, Benjamin , Chaguza, Chrispin , Govindpershad, Shanil , Ousmane, Sani , Senghore, Madikay , du Plessis, Mignon , Pluschke, Gerd, 1952- , Ebruke, Chinelo , McGee, Lesley , Sigaùque , Beutel , Collard, Jean-Marc , Bentley, Stephen D , Kadioglu , Aras , Antonio, Martin , von Gottberg, Anne , French, Neil , Klugman, Keith P , Heyderman, Robert S , Alderson, Mark , Everett, Dean B
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148318 , vital:38729 , DOI: 10.1016/j.vaccine.2016.12.037
- Description: Serotype 1 is one of the most common causes of pneumococcal disease worldwide. Pneumococcal protein vaccines are currently being developed as an alternate intervention strategy to pneumococcal conjugate vaccines. Pre-requisites for an efficacious pneumococcal protein vaccine are universal presence and minimal variation of the target antigen in the pneumococcal population, and the capability to induce a robust human immune response. We used in silico analysis to assess the prevalence of seven protein vaccine candidates (CbpA, PcpA, PhtD, PspA, SP0148, SP1912, SP2108) among 445 serotype 1 pneumococci from 26 different countries, across four continents. CbpA (76%), PspA (68%), PhtD (28%), PcpA (11%) were not universally encoded in the study population, and would not provide full coverage against serotype 1.
- Full Text:
- Date Issued: 2017
The influence of radiation-induced defects on thermoluminescence and optically stimulated luminescence of α-Al2O3: C
- Nyirenda, Angel N, Chithambo, Makaiko L
- Authors: Nyirenda, Angel N , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/119818 , vital:34786 , https://doi.org/10.1016/j.nimb.2017.02.077
- Description: It is known that when α-Al2O3:C is exposed to excessive amounts of ionising radiation, defects are induced within its matrix. We report the influence of radiation-induced defects on the thermoluminescence (TL) and optically stimulated luminescence (OSL) measured from α-Al2O3:C after irradiation to 1000 Gy. These radiation-induced defects are thermally unstable in the region 450–650 °C and result in TL peaks in this range when the TL is measured at 1 °C/s. Heating a sample to 700 °C obliterates the radiation-induced defects, that is, the TL peaks corresponding to the radiation induced defects are no longer observed in the subsequent TL measurements when moderate irradiation doses below 10 Gy are used. The charge traps associated with these radiation-induced defects are more stable than the dosimetric trap when the sample is exposed to either sunlight or 470-nm blue light from LEDs. TL glow curves measured following the defect-inducing irradiation produce a dosimetric peak that is broader and positioned at a higher temperature than observed in glow curves obtained before the heavy irradiation. In addition, sample sensitization/desensitization occurs due to the presence of these radiation-induced defects. Furthermore, both the activation energy and the kinetic order of the dosimetric peak evaluated when the radiation-induced defects are present in the sample are significantly lower in value than those obtained when these defects are absent. The radiation-induced defects also affect the shape and total light sum of the OSL signal as well as the position and width of the resultant residual phototransferred thermoluminescence main peak.
- Full Text: false
- Date Issued: 2017
- Authors: Nyirenda, Angel N , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/119818 , vital:34786 , https://doi.org/10.1016/j.nimb.2017.02.077
- Description: It is known that when α-Al2O3:C is exposed to excessive amounts of ionising radiation, defects are induced within its matrix. We report the influence of radiation-induced defects on the thermoluminescence (TL) and optically stimulated luminescence (OSL) measured from α-Al2O3:C after irradiation to 1000 Gy. These radiation-induced defects are thermally unstable in the region 450–650 °C and result in TL peaks in this range when the TL is measured at 1 °C/s. Heating a sample to 700 °C obliterates the radiation-induced defects, that is, the TL peaks corresponding to the radiation induced defects are no longer observed in the subsequent TL measurements when moderate irradiation doses below 10 Gy are used. The charge traps associated with these radiation-induced defects are more stable than the dosimetric trap when the sample is exposed to either sunlight or 470-nm blue light from LEDs. TL glow curves measured following the defect-inducing irradiation produce a dosimetric peak that is broader and positioned at a higher temperature than observed in glow curves obtained before the heavy irradiation. In addition, sample sensitization/desensitization occurs due to the presence of these radiation-induced defects. Furthermore, both the activation energy and the kinetic order of the dosimetric peak evaluated when the radiation-induced defects are present in the sample are significantly lower in value than those obtained when these defects are absent. The radiation-induced defects also affect the shape and total light sum of the OSL signal as well as the position and width of the resultant residual phototransferred thermoluminescence main peak.
- Full Text: false
- Date Issued: 2017
Thinking with Shakespeare: The Merchant of Venice, Shylock, Caliban and the dynamics of social scale
- Authors: Wright, Laurence
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/454007 , vital:75304 , 10.4314/sisa.v29i1.3
- Description: Contemporary criticism seldom acknowledges Shakespeare’s sensitivity to longer-term historical trajectories. One such variable is social scale. If dramatic conflict in The Merchant of Venice is interpreted solely in terms of clashes between ethical character, social allegiance, and religious affiliation, at the end of the play these clashes persist as a morass of irreconcilables, unresolved and irresolvable. The audience is left in unconditioned liberty to make up its own mind. This paper argues that changing social scale provides a framework which allows the ethical dilemmas posed by The Merchant of Venice to be interpreted coherently, bringing us closer to the experience of ‘thinking with Shakespeare’. Shakespeare’s drama anticipates the rise of large-scale cosmopolitan society and, without underestimating the social tensions involved, challenges the audience to welcome an unknown new world appearing over the horizon.
- Full Text:
- Date Issued: 2017
Thinking with Shakespeare: The Merchant of Venice, Shylock, Caliban and the dynamics of social scale
- Authors: Wright, Laurence
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/454007 , vital:75304 , 10.4314/sisa.v29i1.3
- Description: Contemporary criticism seldom acknowledges Shakespeare’s sensitivity to longer-term historical trajectories. One such variable is social scale. If dramatic conflict in The Merchant of Venice is interpreted solely in terms of clashes between ethical character, social allegiance, and religious affiliation, at the end of the play these clashes persist as a morass of irreconcilables, unresolved and irresolvable. The audience is left in unconditioned liberty to make up its own mind. This paper argues that changing social scale provides a framework which allows the ethical dilemmas posed by The Merchant of Venice to be interpreted coherently, bringing us closer to the experience of ‘thinking with Shakespeare’. Shakespeare’s drama anticipates the rise of large-scale cosmopolitan society and, without underestimating the social tensions involved, challenges the audience to welcome an unknown new world appearing over the horizon.
- Full Text:
- Date Issued: 2017
Variation partitioning of benthic diatom community matrices: Effects of multiple variables on benthic diatom communities in an Austral temperate river system
- Dalu, Tatenda, Wasserman, Ryan J, Magoro, Mandla L, Mwedzi, Tongayi, Froneman, P William, Weyl, Olaf L F
- Authors: Dalu, Tatenda , Wasserman, Ryan J , Magoro, Mandla L , Mwedzi, Tongayi , Froneman, P William , Weyl, Olaf L F
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/467182 , vital:76837 , https://doi.org/10.1016/j.scitotenv.2017.05.162
- Description: This study explores diatom community dynamics in a highly modified semi-arid temperate region river system characterised by inconsistent river flow. Various water and sediment environmental variables were assessed using a multi-faceted analysis approach to determine the spatio-temporal drivers of benthic diatom communities in the river system. Overall, the diatom community was generally dominated by pollution tolerant species, reflecting the anthropogenic intensity and activities on the river system. Diatom community composition was found to be largely determined by water column chemistry variables particularly nutrient concentrations in comparison to sediment chemistry and physical variables. Strong seasonal diatom species composition was also observed and this was driven by strong seasonal variations in nutrient loads and metal concentrations, a result of the variable water flow across the two seasons. However, the greater temporal variation in communities was observed in the smaller systems with the mainstream river system being more homogenous over time. In addition, diatom community composition and environmental variables were found to be different and more pronounced between streams and mainstream sites, than between canals and streams. The study highlights the complex interaction between water column, sediment and physical variables in determining the diatom species composition in small river systems. It also highlights the importance of river flow inconsistency as an indirect variable that alters primary drivers such as nutrient concentrations in the water column and heavy metal levels in the sediment.
- Full Text:
- Date Issued: 2017
- Authors: Dalu, Tatenda , Wasserman, Ryan J , Magoro, Mandla L , Mwedzi, Tongayi , Froneman, P William , Weyl, Olaf L F
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/467182 , vital:76837 , https://doi.org/10.1016/j.scitotenv.2017.05.162
- Description: This study explores diatom community dynamics in a highly modified semi-arid temperate region river system characterised by inconsistent river flow. Various water and sediment environmental variables were assessed using a multi-faceted analysis approach to determine the spatio-temporal drivers of benthic diatom communities in the river system. Overall, the diatom community was generally dominated by pollution tolerant species, reflecting the anthropogenic intensity and activities on the river system. Diatom community composition was found to be largely determined by water column chemistry variables particularly nutrient concentrations in comparison to sediment chemistry and physical variables. Strong seasonal diatom species composition was also observed and this was driven by strong seasonal variations in nutrient loads and metal concentrations, a result of the variable water flow across the two seasons. However, the greater temporal variation in communities was observed in the smaller systems with the mainstream river system being more homogenous over time. In addition, diatom community composition and environmental variables were found to be different and more pronounced between streams and mainstream sites, than between canals and streams. The study highlights the complex interaction between water column, sediment and physical variables in determining the diatom species composition in small river systems. It also highlights the importance of river flow inconsistency as an indirect variable that alters primary drivers such as nutrient concentrations in the water column and heavy metal levels in the sediment.
- Full Text:
- Date Issued: 2017
Wheelchair users, access and exclusion in South Africa higher education
- Chiwandire, Desire, Vincent, Louise
- Authors: Chiwandire, Desire , Vincent, Louise
- Date: 2017
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59984 , vital:27717 , doi: 10.4102/ajod.v6i0.353
- Description: Background: South Africa’s Constitution guarantees everyone, including persons with disabilities, the right to education. A variety of laws are in place obliging higher education institutions to provide appropriate physical access to education sites for all. In practice, however, many buildings remain inaccessible to people with physical disabilities. Objectives: To describe what measures South African universities are taking to make their built environments more accessible to students with diverse types of disabilities, and to assess the adequacy of such measures. Method: We conducted semi-structured in-depth face-to-face interviews with disability unit staff members (DUSMs) based at 10 different public universities in South Africa. Results: Challenges with promoting higher education accessibility for wheelchair users include the preservation and heritage justification for failing to modify older buildings, ad hoc approaches to creating accessible environments and failure to address access to toilets, libraries and transport facilities for wheelchair users. Conclusion: South African universities are still not places where all students are equally able to integrate socially. DUSMs know what ought to be done to make campuses more accessible and welcoming to students with disabilities and should be empowered to play a leading role in sensitising non-disabled members of universities, to create greater awareness of, and appreciation for, the multiple ways in which wheelchair user students continue to be excluded from full participation in university life. South African universities need to adopt a systemic approach to inclusion, which fosters an understanding of inclusion as a fundamental right rather than as a luxury.
- Full Text:
- Date Issued: 2017
- Authors: Chiwandire, Desire , Vincent, Louise
- Date: 2017
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59984 , vital:27717 , doi: 10.4102/ajod.v6i0.353
- Description: Background: South Africa’s Constitution guarantees everyone, including persons with disabilities, the right to education. A variety of laws are in place obliging higher education institutions to provide appropriate physical access to education sites for all. In practice, however, many buildings remain inaccessible to people with physical disabilities. Objectives: To describe what measures South African universities are taking to make their built environments more accessible to students with diverse types of disabilities, and to assess the adequacy of such measures. Method: We conducted semi-structured in-depth face-to-face interviews with disability unit staff members (DUSMs) based at 10 different public universities in South Africa. Results: Challenges with promoting higher education accessibility for wheelchair users include the preservation and heritage justification for failing to modify older buildings, ad hoc approaches to creating accessible environments and failure to address access to toilets, libraries and transport facilities for wheelchair users. Conclusion: South African universities are still not places where all students are equally able to integrate socially. DUSMs know what ought to be done to make campuses more accessible and welcoming to students with disabilities and should be empowered to play a leading role in sensitising non-disabled members of universities, to create greater awareness of, and appreciation for, the multiple ways in which wheelchair user students continue to be excluded from full participation in university life. South African universities need to adopt a systemic approach to inclusion, which fosters an understanding of inclusion as a fundamental right rather than as a luxury.
- Full Text:
- Date Issued: 2017
Academic literacy and the decontextualised learner
- Boughey, Chrissie, McKenna, Sioux
- Authors: Boughey, Chrissie , McKenna, Sioux
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64651 , vital:28585 , http://www.DOI:10.14426/cristal.v4i2.80
- Description: The literacy practices that are valued in the university emerge from specific disciplinary histories yet students are often expected to master these as if they were common sense and natural. This article argues that the autonomous model of literacy, which sees language use as the application of a set of neutral skills, continues to dominate in South African universities. This model denies the extent to which taking on disciplinary literacy practices can be difficult and have implications for identity. It also allows disciplinary norms to remain largely opaque and beyond critique. Furthermore, the autonomous model of literacy is often coupled with a discourse of the ‘decontextualised learner’ who is divorced from her social context, with higher education success seen to be resting largely upon attributes inherent in, or lacking from, the individual. Sadly, alternative critical social understandings have not been widely taken up despite their being well researched. Indeed, such understandings have often been misappropriated in ways that draw on critical social terminology to offer autonomous, decontextualised, remedial student interventions. We argue that these issues are implicated in students’ accusations that universities are alienating spaces.
- Full Text:
- Date Issued: 2016
- Authors: Boughey, Chrissie , McKenna, Sioux
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64651 , vital:28585 , http://www.DOI:10.14426/cristal.v4i2.80
- Description: The literacy practices that are valued in the university emerge from specific disciplinary histories yet students are often expected to master these as if they were common sense and natural. This article argues that the autonomous model of literacy, which sees language use as the application of a set of neutral skills, continues to dominate in South African universities. This model denies the extent to which taking on disciplinary literacy practices can be difficult and have implications for identity. It also allows disciplinary norms to remain largely opaque and beyond critique. Furthermore, the autonomous model of literacy is often coupled with a discourse of the ‘decontextualised learner’ who is divorced from her social context, with higher education success seen to be resting largely upon attributes inherent in, or lacking from, the individual. Sadly, alternative critical social understandings have not been widely taken up despite their being well researched. Indeed, such understandings have often been misappropriated in ways that draw on critical social terminology to offer autonomous, decontextualised, remedial student interventions. We argue that these issues are implicated in students’ accusations that universities are alienating spaces.
- Full Text:
- Date Issued: 2016
Detection of plant growth enhancing features in psychrotolerant yeasts from Patagonia (Argentina)
- Mestre, María C, Fontenla, Sonia, Bruzone, Marie C, Fernández, Natalia V, Dames, Joanna F
- Authors: Mestre, María C , Fontenla, Sonia , Bruzone, Marie C , Fernández, Natalia V , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448581 , vital:74744 , https://doi.org/10.1002/jobm.201500728
- Description: This study explores the biotechnological potential for plant production of twelve psychrotolerant yeasts strains from Northwest‐Patagonia. These strains were isolated from different substrates associated with Nothofagus sp. in native forests and Vaccinium sp. in a commercial plantation. Yeasts characterization was performed using in vitro assays to evaluate the production of auxin‐like compounds and siderophores, ability to solubilize inorganic phosphate and to reduce common plant pathogen growth. Strain YF8.3 identified as Aureobasidium pullullans was the main producer of auxin‐like and siderophores compounds. Phosphate solubilization was a characteristic observed by strains L8.12 and CRUB1775 identified as Holtermaniella takashimae and Candida maritima, respectively. Different yeast strains were able to inhibit the growth of Verticillium dahliae PPRI5569 and Pythium aphanidermatum PPRI 9009, but they all failed to inhibit the growth of Fusarium oxysporum PPRI5457. The present study, suggests that yeasts present in different environments in Northwestern‐Patagonian have physiological in vitro features which may influence plant growth. These results are promising for the developing of biological products based on Patagonian yeasts for plant production in cold‐temperate regions.
- Full Text:
- Date Issued: 2016
- Authors: Mestre, María C , Fontenla, Sonia , Bruzone, Marie C , Fernández, Natalia V , Dames, Joanna F
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448581 , vital:74744 , https://doi.org/10.1002/jobm.201500728
- Description: This study explores the biotechnological potential for plant production of twelve psychrotolerant yeasts strains from Northwest‐Patagonia. These strains were isolated from different substrates associated with Nothofagus sp. in native forests and Vaccinium sp. in a commercial plantation. Yeasts characterization was performed using in vitro assays to evaluate the production of auxin‐like compounds and siderophores, ability to solubilize inorganic phosphate and to reduce common plant pathogen growth. Strain YF8.3 identified as Aureobasidium pullullans was the main producer of auxin‐like and siderophores compounds. Phosphate solubilization was a characteristic observed by strains L8.12 and CRUB1775 identified as Holtermaniella takashimae and Candida maritima, respectively. Different yeast strains were able to inhibit the growth of Verticillium dahliae PPRI5569 and Pythium aphanidermatum PPRI 9009, but they all failed to inhibit the growth of Fusarium oxysporum PPRI5457. The present study, suggests that yeasts present in different environments in Northwestern‐Patagonian have physiological in vitro features which may influence plant growth. These results are promising for the developing of biological products based on Patagonian yeasts for plant production in cold‐temperate regions.
- Full Text:
- Date Issued: 2016
Diatom-based water quality monitoring in southern Africa: challenges and future prospects
- Dalu, Tatenda, Froneman, P William
- Authors: Dalu, Tatenda , Froneman, P William
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124297 , vital:35590 , http://dx.doi.org/10.4314/wsa.v42i4.05
- Description: Diatoms are of significant ecological importance in aquatic ecosystems, which stems from their dynamic position at the base of the trophic web as primary producers. Because diatom communities have specific environmental requirements and respond rapidly to changes in environmental conditions they are often employed as a cost-effective method to assess anthropogenic impacts and health statuses of aquatic ecosystems, particularly in Europe and North America. The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past research pertaining to African diatom taxonomy should be made readily accessible to all through electronic media for use as a reference point. Moreover, following the same approach as for macroinvertebrate biomonitoring, African and other developing countries can resort to intermediate diatom taxonomy (i.e. genus), which is easier, less time-consuming and requires less-skilled personnel. While the lack of capacity and baseline information on diatom community composition and ecological requirements represent significant hurdles, diatom biomonitoring potentially holds much promise for understanding the ecological functioning and management of aquatic ecosystems in southern Africa. The application of diatom-based water quality assessment protocols has direct and immediate value for use as an ‘added-value’ assessment tool in addition to the use of macroinvertebrates and fish indices as these can indicate anthropogenically impacted and pristine sites.
- Full Text:
- Date Issued: 2016
- Authors: Dalu, Tatenda , Froneman, P William
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124297 , vital:35590 , http://dx.doi.org/10.4314/wsa.v42i4.05
- Description: Diatoms are of significant ecological importance in aquatic ecosystems, which stems from their dynamic position at the base of the trophic web as primary producers. Because diatom communities have specific environmental requirements and respond rapidly to changes in environmental conditions they are often employed as a cost-effective method to assess anthropogenic impacts and health statuses of aquatic ecosystems, particularly in Europe and North America. The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past research pertaining to African diatom taxonomy should be made readily accessible to all through electronic media for use as a reference point. Moreover, following the same approach as for macroinvertebrate biomonitoring, African and other developing countries can resort to intermediate diatom taxonomy (i.e. genus), which is easier, less time-consuming and requires less-skilled personnel. While the lack of capacity and baseline information on diatom community composition and ecological requirements represent significant hurdles, diatom biomonitoring potentially holds much promise for understanding the ecological functioning and management of aquatic ecosystems in southern Africa. The application of diatom-based water quality assessment protocols has direct and immediate value for use as an ‘added-value’ assessment tool in addition to the use of macroinvertebrates and fish indices as these can indicate anthropogenically impacted and pristine sites.
- Full Text:
- Date Issued: 2016
Do indigenous street trees promote more biodiversity than alien ones? evidence using mistletoes and birds in South Africa
- Authors: Shackleton, Charlie M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64663 , vital:28587 , http://www.doi:10.3390/f7070134
- Description: Trees in urban landscapes provide a range of ecosystem services, including habitat, refugia,food, and corridors for other fauna and flora. However, there is some debate whether the richness and abundance of other biodiversity supported is influenced by the provenance of trees, i.e., native or non-native. This study assessed the presence of mistletoes and birds (and nests) in 1261 street trees. There were marked differences between native and non-native street trees, with the former having a significantly higher prevalence of birds (and nests) and supporting more species and in greater densities, whilst the latter supported a higher prevalence of mistletoes. Additionally, for birds, the proximity to green space, tree size and species were also important, whilst for mistletoes, the proximity to green space, slope aspect, and tree species were significant. Preference ratios indicated that some tree species had a higher than random occurrence of birds or mistletoes, whilst others had a low abundance. The indigenous tree species, Acacia karroo Hayne was the only reasonably abundant street tree species that was important for birds, nests, and mistletoes. At the street scale, there was a positive relationship between street tree species richness and bird species richness. These results emphasise the importance of selecting appropriate tree species if biodiversity conservation is a core outcome.
- Full Text:
- Date Issued: 2016
- Authors: Shackleton, Charlie M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64663 , vital:28587 , http://www.doi:10.3390/f7070134
- Description: Trees in urban landscapes provide a range of ecosystem services, including habitat, refugia,food, and corridors for other fauna and flora. However, there is some debate whether the richness and abundance of other biodiversity supported is influenced by the provenance of trees, i.e., native or non-native. This study assessed the presence of mistletoes and birds (and nests) in 1261 street trees. There were marked differences between native and non-native street trees, with the former having a significantly higher prevalence of birds (and nests) and supporting more species and in greater densities, whilst the latter supported a higher prevalence of mistletoes. Additionally, for birds, the proximity to green space, tree size and species were also important, whilst for mistletoes, the proximity to green space, slope aspect, and tree species were significant. Preference ratios indicated that some tree species had a higher than random occurrence of birds or mistletoes, whilst others had a low abundance. The indigenous tree species, Acacia karroo Hayne was the only reasonably abundant street tree species that was important for birds, nests, and mistletoes. At the street scale, there was a positive relationship between street tree species richness and bird species richness. These results emphasise the importance of selecting appropriate tree species if biodiversity conservation is a core outcome.
- Full Text:
- Date Issued: 2016
Docking of HIV protease to silver nanoparticles
- Whiteley, Chris G, Shing, C-Y, Kuo, C-C, Lee, Duu-Jong
- Authors: Whiteley, Chris G , Shing, C-Y , Kuo, C-C , Lee, Duu-Jong
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67105 , vital:29032 , https://doi.org/10.1016/j.jtice.2015.10.029
- Description: publisher version , This interaction of silver nanoparticles (AgNP) with human immune-deficiency virus aspartic protease (HIVPR) is examined by molecular dynamics simulation using the Colores (Situs) package and biophysical techniques using UV–vis spectroscopy, dynamic light scattering, transmission electron microscopy and circular dichroism. The ‘docking’ of AgNP with HIVPR creates a complex [AgNP–HIVPR] to initiate a hypochromic time-dependent red-shift for the surface plasmon resonance maximum. MD simulations reflect large perturbations to enzyme conformations by fluctuations of both rmsd and B-factors. Increase in changes to electrostatic potentials within the enzyme, especially, with chain B, suggest hydrophobic interactions for the binding of the AgNP. This is supported by changes to mainchain and sidechain dihedrals for many hydrophobic amino acid including Cys95, Trp6 and Trp42. Circular dichroism spectra reveal disappearance of α-helices and β-sheets and increase in random coil first from chain B then chain A. During initial stages of the interactive simulation the enzyme is conformational flexible to accommodate the AgNP, that docks with the enzyme under a cooperative mechanism, until a more stable structure is formed at convergence. There is a decrease in size of the HIVPR–AgNP complex measured by changes to the gyration radius supporting evidence that the AgNP associates, initially, with chain B.
- Full Text: false
- Date Issued: 2016
- Authors: Whiteley, Chris G , Shing, C-Y , Kuo, C-C , Lee, Duu-Jong
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67105 , vital:29032 , https://doi.org/10.1016/j.jtice.2015.10.029
- Description: publisher version , This interaction of silver nanoparticles (AgNP) with human immune-deficiency virus aspartic protease (HIVPR) is examined by molecular dynamics simulation using the Colores (Situs) package and biophysical techniques using UV–vis spectroscopy, dynamic light scattering, transmission electron microscopy and circular dichroism. The ‘docking’ of AgNP with HIVPR creates a complex [AgNP–HIVPR] to initiate a hypochromic time-dependent red-shift for the surface plasmon resonance maximum. MD simulations reflect large perturbations to enzyme conformations by fluctuations of both rmsd and B-factors. Increase in changes to electrostatic potentials within the enzyme, especially, with chain B, suggest hydrophobic interactions for the binding of the AgNP. This is supported by changes to mainchain and sidechain dihedrals for many hydrophobic amino acid including Cys95, Trp6 and Trp42. Circular dichroism spectra reveal disappearance of α-helices and β-sheets and increase in random coil first from chain B then chain A. During initial stages of the interactive simulation the enzyme is conformational flexible to accommodate the AgNP, that docks with the enzyme under a cooperative mechanism, until a more stable structure is formed at convergence. There is a decrease in size of the HIVPR–AgNP complex measured by changes to the gyration radius supporting evidence that the AgNP associates, initially, with chain B.
- Full Text: false
- Date Issued: 2016
Encouraging pro-environmental behaviour: energy use and recycling at Rhodes University, South Africa
- Mtutu, Paidamoyo, Thondhlana, Gladman
- Authors: Mtutu, Paidamoyo , Thondhlana, Gladman
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67743 , vital:29136 , https://doi.org/10.1016/j.habitatint.2015.11.031
- Description: Publisher version , The rapid expansion of student numbers, staff and support infrastructures in higher education institutions often result in increased demand for resources such as energy and paper. Promoting pro-environmental behaviour is critical if higher education institutions are to achieve sustainable resource use. Using surveys, reported energy use and recycling behaviour of staff and students in the Faculty of Education at Rhodes University, South Africa was explored. The results showed that self-reported pro-environmental behaviour was mediated by demographic factors and personal values such as ‘liking of aesthetic beauty and biodiversity’, ‘social relations’, ‘a varied life’ and ‘freedom’. Personal values, though key in shaping participants' attitudes toward the environment did not always translate into pro-environmental behaviour. Situational factors beyond the control of participants were cited as barriers to pro-environmental actions. Lessons from this study point to the need to carefully study the assumptions underlying intervention strategies aimed at promoting pro-environmental behaviour and to get rid of barriers to enable pro-environmental actions.
- Full Text: false
- Date Issued: 2016
Encouraging pro-environmental behaviour: energy use and recycling at Rhodes University, South Africa
- Authors: Mtutu, Paidamoyo , Thondhlana, Gladman
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67743 , vital:29136 , https://doi.org/10.1016/j.habitatint.2015.11.031
- Description: Publisher version , The rapid expansion of student numbers, staff and support infrastructures in higher education institutions often result in increased demand for resources such as energy and paper. Promoting pro-environmental behaviour is critical if higher education institutions are to achieve sustainable resource use. Using surveys, reported energy use and recycling behaviour of staff and students in the Faculty of Education at Rhodes University, South Africa was explored. The results showed that self-reported pro-environmental behaviour was mediated by demographic factors and personal values such as ‘liking of aesthetic beauty and biodiversity’, ‘social relations’, ‘a varied life’ and ‘freedom’. Personal values, though key in shaping participants' attitudes toward the environment did not always translate into pro-environmental behaviour. Situational factors beyond the control of participants were cited as barriers to pro-environmental actions. Lessons from this study point to the need to carefully study the assumptions underlying intervention strategies aimed at promoting pro-environmental behaviour and to get rid of barriers to enable pro-environmental actions.
- Full Text: false
- Date Issued: 2016